Aliases for ZBED5-AS1 Gene

Subcategory (RNA class) for ZBED5-AS1 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for ZBED5-AS1 Gene

  • ZBED5 Antisense RNA 1 2 3 5
  • ZBED5-AS1 2 5 165
  • NONHSAG007652.2 91
  • NONHSAG007650.2 91
  • HSALNG0082661 164
  • CTD-2003C8.1 3

External Ids for ZBED5-AS1 Gene

Previous GeneCards Identifiers for ZBED5-AS1 Gene

  • GC11P010881

Summaries for ZBED5-AS1 Gene

GeneCards Summary for ZBED5-AS1 Gene

ZBED5-AS1 (ZBED5 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for ZBED5-AS1 Gene

  • Metazoan signal recognition particle RNA

Additional gene information for ZBED5-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ZBED5-AS1 Gene

Genomics for ZBED5-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ZBED5-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZBED5-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ZBED5-AS1 Gene

Genomic Locations for ZBED5-AS1 Gene
chr11:10,856,902-10,914,529
(GRCh38/hg38)
Size:
57,628 bases
Orientation:
Plus strand
chr11:10,879,764-10,928,349
(GRCh37/hg19)
Size:
48,586 bases
Orientation:
Plus strand

Genomic View for ZBED5-AS1 Gene

Genes around ZBED5-AS1 on UCSC Golden Path with GeneCards custom track
ZBED5-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ZBED5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZBED5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZBED5-AS1 Gene

Proteins for ZBED5-AS1 Gene

Post-translational modifications for ZBED5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZBED5-AS1 Gene

Domains & Families for ZBED5-AS1 Gene

Gene Families for ZBED5-AS1 Gene

genes like me logo Genes that share domains with ZBED5-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZBED5-AS1 Gene

Function for ZBED5-AS1 Gene

Phenotypes From GWAS Catalog for ZBED5-AS1 Gene

Phenotypes for ZBED5-AS1 Gene

genes like me logo Genes that share phenotypes with ZBED5-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZBED5-AS1 Gene

Localization for ZBED5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZBED5-AS1 Gene

Pathways & Interactions for ZBED5-AS1 Gene

PathCards logo

SuperPathways for ZBED5-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZBED5-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ZBED5-AS1 Gene

Drugs & Compounds for ZBED5-AS1 Gene

No Compound Related Data Available

Transcripts for ZBED5-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ZBED5-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D0BB_9606 lncRNA 1113 3

HGNC: 48646,

RefSeq: NR_034137,

LNCipedia: ZBED5-AS1:4,

URS000002AF22_9606 lncRNA 415 3

Ensembl: ENST00000530344 (view in UCSC) ,

LncBook: HSALNT0172040,

LNCipedia: ZBED5-AS1:11,

URS0000EEFDD8_9606 lncRNA 2666 1

Ensembl: ENST00000669704 (view in UCSC) ,

URS0000EF48DE_9606 lncRNA 1332 1

Ensembl: ENST00000654337 (view in UCSC) ,

URS0000EEC4CC_9606 lncRNA 1153 1

Ensembl: ENST00000664276 (view in UCSC) ,

ZBED5-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ZBED5-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ZBED5-AS1 Gene

No ASD Table

Relevant External Links for ZBED5-AS1 Gene

GeneLoc Exon Structure for
ZBED5-AS1

Expression for ZBED5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZBED5-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ZBED5-AS1

genes like me logo Genes that share expression patterns with ZBED5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZBED5-AS1 Gene

Orthologs for ZBED5-AS1 Gene

Evolution for ZBED5-AS1 Gene

ENSEMBL:
Gene Tree for ZBED5-AS1 (if available)
TreeFam:
Gene Tree for ZBED5-AS1 (if available)

No data available for Orthologs for ZBED5-AS1 Gene

Paralogs for ZBED5-AS1 Gene

No data available for Paralogs for ZBED5-AS1 Gene

Variants for ZBED5-AS1 Gene

Additional dbSNP identifiers (rs#s) for ZBED5-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ZBED5-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3625365 CNV loss 21293372
nsv483000 CNV loss 15286789

Additional Variant Information for ZBED5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZBED5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ZBED5-AS1 Gene

Disorders for ZBED5-AS1 Gene

No disorders were found for ZBED5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZBED5-AS1 Gene

Publications for ZBED5-AS1 Gene

No publications were found for ZBED5-AS1 Gene.

Products for ZBED5-AS1 Gene

Sources for ZBED5-AS1 Gene