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Aliases for ZBED5-AS1 Gene

Subcategory (RNA class) for ZBED5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ZBED5-AS1 Gene

  • ZBED5 Antisense RNA 1 2 3 5
  • CTD-2003C8.1 3

External Ids for ZBED5-AS1 Gene

Summaries for ZBED5-AS1 Gene

GeneCards Summary for ZBED5-AS1 Gene

ZBED5-AS1 (ZBED5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ZBED5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZBED5-AS1 Gene

Genomics for ZBED5-AS1 Gene

GeneHancer (GH) Regulatory Elements for ZBED5-AS1 Gene

Promoters and enhancers for ZBED5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J010855 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 622.9 0.0 -25 4.4 CC2D1A SP1 ELF3 ZFX ZNF148 NKRF POLR2A MLLT1 ZNF121 GTF2F1 ZBED5-AS1 ZBED5 EIF4G2 CTR9 LOC101928053 SNORD97 LOC105376547
GH11J010805 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 17.6 -50.2 -50197 5.6 SP1 ZFX CC2D1A SIX5 NKRF POLR2A MLLT1 ZNF121 CEBPG GTF2F1 EIF4G2 LOC101928053 ZBED5 CTR9 ZBED5-AS1 GC11M010801 SNORD97 GC11M010630
GH11J010916 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 25.4 +60.8 60784 4.8 CBFA2T2 MLLT1 GTF2F1 BACH1 TRIM24 ZNF639 EGR1 SMARCA4 GMEB1 DPF2 ZBED5-AS1 ZBED5 AMPD3 ENSG00000250041 LINC02752
GH11J010898 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 18.5 +41.7 41675 5.2 ZFX CC2D1A ZKSCAN8 MNT CBFA2T2 MLLT1 ZNF121 GTF2F1 ZSCAN21 BACH1 ENSG00000250041 ZBED5 ZBED5-AS1 EIF4G2 CTR9 AMPD3 SNORD97 LINC02752
GH11J010906 Enhancer 1.1 Ensembl ENCODE dbSUPER 20.9 +49.8 49784 4 MLLT1 CTCF CAVIN1 IKZF1 PRDM10 NFRKB PKNOX1 MGA MAX RAD21 ZBED5-AS1 ENSG00000250041 LINC02752
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZBED5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZBED5-AS1 Gene

Genomic Locations for ZBED5-AS1 Gene
chr11:10,858,217-10,906,802
(GRCh38/hg38)
Size:
48,586 bases
Orientation:
Plus strand
chr11:10,879,764-10,928,349
(GRCh37/hg19)
Size:
48,586 bases
Orientation:
Plus strand

Genomic View for ZBED5-AS1 Gene

Genes around ZBED5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZBED5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZBED5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZBED5-AS1 Gene

Proteins for ZBED5-AS1 Gene

Post-translational modifications for ZBED5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZBED5-AS1 Gene

Domains & Families for ZBED5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZBED5-AS1 Gene

Function for ZBED5-AS1 Gene

Phenotypes From GWAS Catalog for ZBED5-AS1 Gene

Phenotypes for ZBED5-AS1 Gene

genes like me logo Genes that share phenotypes with ZBED5-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZBED5-AS1 Gene

Localization for ZBED5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZBED5-AS1 Gene

Pathways & Interactions for ZBED5-AS1 Gene

PathCards logo

SuperPathways for ZBED5-AS1 Gene

No Data Available

Interacting Proteins for ZBED5-AS1 Gene

Gene Ontology (GO) - Biological Process for ZBED5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZBED5-AS1 Gene

Drugs & Compounds for ZBED5-AS1 Gene

No Compound Related Data Available

Transcripts for ZBED5-AS1 Gene

mRNA/cDNA for ZBED5-AS1 Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ZBED5-AS1 Gene

No ASD Table

Relevant External Links for ZBED5-AS1 Gene

GeneLoc Exon Structure for
ZBED5-AS1
ECgene alternative splicing isoforms for
ZBED5-AS1

Expression for ZBED5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZBED5-AS1 Gene

genes like me logo Genes that share expression patterns with ZBED5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZBED5-AS1 Gene

Orthologs for ZBED5-AS1 Gene

Evolution for ZBED5-AS1 Gene

ENSEMBL:
Gene Tree for ZBED5-AS1 (if available)
TreeFam:
Gene Tree for ZBED5-AS1 (if available)

No data available for Orthologs for ZBED5-AS1 Gene

Paralogs for ZBED5-AS1 Gene

No data available for Paralogs for ZBED5-AS1 Gene

Variants for ZBED5-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZBED5-AS1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000000576 -- 10,875,125(+) A/G intron_variant
rs1000301071 -- 10,875,475(+) A/T intron_variant
rs1000343947 -- 10,863,616(+) G/A intron_variant
rs1000346774 -- 10,863,880(+) C/T intron_variant
rs1000595629 -- 10,858,274(+) G/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ZBED5-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3625365 CNV loss 21293372
nsv483000 CNV loss 15286789

Additional Variant Information for ZBED5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZBED5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZBED5-AS1 Gene

Disorders for ZBED5-AS1 Gene

Additional Disease Information for ZBED5-AS1

No disorders were found for ZBED5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZBED5-AS1 Gene

Publications for ZBED5-AS1 Gene

No publications were found for ZBED5-AS1 Gene.

Products for ZBED5-AS1 Gene

Sources for ZBED5-AS1 Gene

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