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Aliases for ZBED5-AS1 Gene

Subcategory (RNA class) for ZBED5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZBED5-AS1 Gene

  • ZBED5 Antisense RNA 1 2 3 5
  • CTD-2003C8.1 3

External Ids for ZBED5-AS1 Gene

Summaries for ZBED5-AS1 Gene

GeneCards Summary for ZBED5-AS1 Gene

ZBED5-AS1 (ZBED5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ZBED5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZBED5-AS1 Gene

Genomics for ZBED5-AS1 Gene

GeneHancer (GH) Regulatory Elements for ZBED5-AS1 Gene

Promoters and enhancers for ZBED5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I010855 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 573.1 0.0 -25 4.4 PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 POLR2B ZBED5-AS1 ZBED5 CTR9 LOC101928053 EIF4G2 SNORD97 LOC105376547
GH11I010805 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 17.6 -50.4 -50363 5.2 MLX ZFP64 DMAP1 YY1 ZNF143 SP3 NFYC GLIS1 NBN NR2C1 EIF4G2 LOC101928053 ZBED5 CTR9 ZBED5-AS1 ENSG00000255125 GC11M010801 SNORD97 GC11M010630
GH11I010897 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 21.4 +42.4 42368 5.3 PKNOX1 SMAD1 FOXA2 ARNT SIN3A FEZF1 ZNF2 POLR2B ZNF766 FOS ENSG00000250041 ZBED5 CTR9 ZBED5-AS1 EIF4G2 ENSG00000255125 AMPD3 SNORD97 RNF141 LOC105376550
GH11I010906 Enhancer 1.1 Ensembl ENCODE dbSUPER 20.9 +49.7 49718 3.6 CTCF PKNOX1 MAX ASH1L E4F1 RAD21 RFX5 GATA3 SMC3 PRDM10 ZBED5-AS1 ENSG00000250041 LOC105376550
GH11I010878 Enhancer 1.1 Ensembl ENCODE dbSUPER 20 +20.5 20520 0.9 ELF3 CTCF ETV1 TEAD4 E4F1 RAD21 CHAMP1 CC2D1A SMC3 ZNF143 ZBED5-AS1 EIF4G2 SNORD97 ZBED5 ENSG00000250041
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZBED5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZBED5-AS1 Gene

Genomic Locations for ZBED5-AS1 Gene
chr11:10,858,217-10,906,802
(GRCh38/hg38)
Size:
48,586 bases
Orientation:
Plus strand
chr11:10,879,764-10,928,349
(GRCh37/hg19)

Genomic View for ZBED5-AS1 Gene

Genes around ZBED5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZBED5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZBED5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZBED5-AS1 Gene

Proteins for ZBED5-AS1 Gene

Post-translational modifications for ZBED5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZBED5-AS1 Gene

Domains & Families for ZBED5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZBED5-AS1 Gene

Function for ZBED5-AS1 Gene

Phenotypes for ZBED5-AS1 Gene

GenomeRNAi human phenotypes for ZBED5-AS1:
genes like me logo Genes that share phenotypes with ZBED5-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZBED5-AS1 Gene

Localization for ZBED5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZBED5-AS1 Gene

Pathways & Interactions for ZBED5-AS1 Gene

SuperPathways for ZBED5-AS1 Gene

No Data Available

Interacting Proteins for ZBED5-AS1 Gene

Gene Ontology (GO) - Biological Process for ZBED5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZBED5-AS1 Gene

Drugs & Compounds for ZBED5-AS1 Gene

No Compound Related Data Available

Transcripts for ZBED5-AS1 Gene

mRNA/cDNA for ZBED5-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ZBED5-AS1 Gene

No ASD Table

Relevant External Links for ZBED5-AS1 Gene

GeneLoc Exon Structure for
ZBED5-AS1
ECgene alternative splicing isoforms for
ZBED5-AS1

Expression for ZBED5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZBED5-AS1 Gene

genes like me logo Genes that share expression patterns with ZBED5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZBED5-AS1 Gene

Orthologs for ZBED5-AS1 Gene

Evolution for ZBED5-AS1 Gene

ENSEMBL:
Gene Tree for ZBED5-AS1 (if available)
TreeFam:
Gene Tree for ZBED5-AS1 (if available)

No data available for Orthologs for ZBED5-AS1 Gene

Paralogs for ZBED5-AS1 Gene

No data available for Paralogs for ZBED5-AS1 Gene

Variants for ZBED5-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZBED5-AS1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000000576 -- 10,875,125(+) A/G intron_variant
rs1000301071 -- 10,875,475(+) A/T intron_variant
rs1000343947 -- 10,863,616(+) G/A intron_variant
rs1000346774 -- 10,863,880(+) C/T intron_variant
rs1000595629 -- 10,858,274(+) G/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ZBED5-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv483000 CNV loss 15286789
esv3625365 CNV loss 21293372

Additional Variant Information for ZBED5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZBED5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZBED5-AS1 Gene

Disorders for ZBED5-AS1 Gene

Additional Disease Information for ZBED5-AS1

No disorders were found for ZBED5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZBED5-AS1 Gene

Publications for ZBED5-AS1 Gene

No publications were found for ZBED5-AS1 Gene.

Products for ZBED5-AS1 Gene

Sources for ZBED5-AS1 Gene

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