Aliases for ZBED3-AS1 Gene

Subcategory (RNA class) for ZBED3-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ZBED3-AS1 Gene

  • ZBED3 Antisense RNA 1 2 3 5
  • ZBED3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ZBED3-AS1 2 168
  • HSALNG0042820 167
  • NONHSAG040784 92
  • CTC-564N23.3 3

External Ids for ZBED3-AS1 Gene

Previous GeneCards Identifiers for ZBED3-AS1 Gene

  • GC05P076384

Summaries for ZBED3-AS1 Gene

GeneCards Summary for ZBED3-AS1 Gene

ZBED3-AS1 (ZBED3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ZBED3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ZBED3-AS1 Gene

Genomics for ZBED3-AS1 Gene

GeneHancer (GH) Regulatory Elements for ZBED3-AS1 Gene

Promoters and enhancers for ZBED3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J077085 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 515 +1.5 1492 4.2 EP300 MYC POLR2G USF1 JUND PHF8 ZFX ZNF639 CTCF ZBTB10 ZBED3-AS1 ENSG00000284762 ZBED3 lnc-WDR41-3 lnc-ZBED3-1 RF00017-4735 ENSG00000285000
GH05J077029 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 10.6 -55.0 -54995 2.8 ZBTB40 ZNF217 EP300 TCF12 SIN3A POLR2G SP1 GTF2E2 PHF8 ZFX AGGF1 ENSG00000285000 ENSG00000250615 SNORA47 ZBED3-AS1 CRHBP RF00017-4735
GH05J077231 Enhancer 0.9 FANTOM5 Ensembl ENCODE 10.5 +146.7 146705 3.8 CTCF RFX1 ZBTB17 SPI1 BMI1 ZSCAN16 RAD21 ZNF449 ZBTB20 ZSCAN4 PDE8B ZBED3-AS1 S100Z HSALNG0042825 ENSG00000284762
GH05J077426 Enhancer 0.9 Ensembl ENCODE 10.6 +341.2 341205 2.8 ZNF217 TCF12 TCF7 CTBP1 CEBPB FOXA1 BCL6 RXRA RARA HNF4A PDE8B WDR41 ZBED3-AS1 lnc-OTP-5 lnc-WDR41-1 piR-44878-005 ENSG00000284762
GH05J077418 Promoter/Enhancer 0.8 EPDnew Ensembl 10.5 +332.5 332505 1.4 ZBTB26 CREB1 NFE2 GATA3 BCL6 HLF PDE8B ZBED3-AS1 WDR41 lnc-OTP-5 piR-44878-005 ENSG00000284762
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ZBED3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZBED3-AS1 Gene

Genomic Locations for ZBED3-AS1 Gene
chr5:77,085,796-77,184,279
(GRCh38/hg38)
Size:
98,484 bases
Orientation:
Plus strand
chr5:76,382,565-76,462,734
(GRCh37/hg19)
Size:
80,170 bases
Orientation:
Plus strand

Genomic View for ZBED3-AS1 Gene

Genes around ZBED3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZBED3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZBED3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZBED3-AS1 Gene

Proteins for ZBED3-AS1 Gene

Post-translational modifications for ZBED3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZBED3-AS1 Gene

Domains & Families for ZBED3-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ZBED3-AS1 Gene

Function for ZBED3-AS1 Gene

Phenotypes From GWAS Catalog for ZBED3-AS1 Gene

Phenotypes for ZBED3-AS1 Gene

genes like me logo Genes that share phenotypes with ZBED3-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZBED3-AS1 Gene

Localization for ZBED3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZBED3-AS1 Gene

Pathways & Interactions for ZBED3-AS1 Gene

PathCards logo

SuperPathways for ZBED3-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ZBED3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ZBED3-AS1 Gene

Drugs & Compounds for ZBED3-AS1 Gene

No Compound Related Data Available

Transcripts for ZBED3-AS1 Gene

mRNA/cDNA for ZBED3-AS1 Gene

90 RNACentral transcripts :
1 REFSEQ mRNAs :
7 NCBI additional mRNA sequence :
45 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
25 NONCODE transcripts :
26 LncBook transcripts :
89 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ZBED3-AS1 Gene

No ASD Table

Relevant External Links for ZBED3-AS1 Gene

GeneLoc Exon Structure for
ZBED3-AS1

Expression for ZBED3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZBED3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ZBED3-AS1 Gene

This gene is overexpressed in Adipose - Visceral (Omentum) (x4.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ZBED3-AS1

SOURCE GeneReport for Unigene cluster for ZBED3-AS1 Gene:

Hs.161338
genes like me logo Genes that share expression patterns with ZBED3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZBED3-AS1 Gene

Orthologs for ZBED3-AS1 Gene

Evolution for ZBED3-AS1 Gene

ENSEMBL:
Gene Tree for ZBED3-AS1 (if available)
TreeFam:
Gene Tree for ZBED3-AS1 (if available)

No data available for Orthologs for ZBED3-AS1 Gene

Paralogs for ZBED3-AS1 Gene

No data available for Paralogs for ZBED3-AS1 Gene

Variants for ZBED3-AS1 Gene

Additional dbSNP identifiers (rs#s) for ZBED3-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ZBED3-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2730326 CNV deletion 23290073
esv2730327 CNV deletion 23290073
esv3307010 CNV mobile element insertion 20981092
esv3349246 CNV insertion 20981092
esv3430649 CNV insertion 20981092
esv3605480 CNV loss 21293372
nsv1027236 CNV gain 25217958
nsv469515 CNV loss 16826518
nsv4886 CNV insertion 18451855
nsv4887 CNV insertion 18451855
nsv823102 CNV gain 20364138
nsv980687 CNV duplication 23825009

Additional Variant Information for ZBED3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZBED3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ZBED3-AS1 Gene

Disorders for ZBED3-AS1 Gene

Additional Disease Information for ZBED3-AS1

No disorders were found for ZBED3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZBED3-AS1 Gene

Publications for ZBED3-AS1 Gene

  1. Long noncoding RNAs expression signatures in chondrogenic differentiation of human bone marrow mesenchymal stem cells. (PMID: 25482444) Wang L … Wang Y (Biochemical and biophysical research communications 2015) 2 3 54
  2. Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis. (PMID: 20581827) Voight BF … GIANT Consortium (Nature genetics 2010) 3 54
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for ZBED3-AS1 Gene

Sources for ZBED3-AS1 Gene