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Aliases for YTHDF3-AS1 Gene

Subcategory (RNA class) for YTHDF3-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for YTHDF3-AS1 Gene

  • YTHDF3 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for YTHDF3-AS1 Gene

ORGUL Members for YTHDF3-AS1 Gene

Previous GeneCards Identifiers for YTHDF3-AS1 Gene

  • GC08M064080

Summaries for YTHDF3-AS1 Gene

GeneCards Summary for YTHDF3-AS1 Gene

YTHDF3-AS1 (YTHDF3 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for YTHDF3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for YTHDF3-AS1 Gene

Genomics for YTHDF3-AS1 Gene

GeneHancer (GH) Regulatory Elements for YTHDF3-AS1 Gene

Promoters and enhancers for YTHDF3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I063166 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 556.6 -0.1 -70 4.2 HDGF PKNOX1 SMAD1 MLX ARNT ARID4B NEUROD1 SIN3A FEZF1 DMAP1 YTHDF3 YTHDF3-AS1 GC08P063145
GH08I063218 Enhancer 1 Ensembl ENCODE 4.7 -51.9 -51886 3.5 PKNOX1 SIN3A BRCA1 RFX5 ZEB1 ZNF366 ZSCAN5C RCOR1 FOS DEK YTHDF3-AS1 ENSG00000261542 RN7SL135P GC08P063145
GH08I063222 Enhancer 0.7 Ensembl ENCODE 4.7 -54.0 -53959 0.4 CTCF ZNF654 ZNF143 SMC3 ZNF384 RAD21 YTHDF3-AS1 ENSG00000261542 RN7SL135P GC08P063145
GH08I063191 Enhancer 0.5 Ensembl 4.2 -23.8 -23759 1.2 POLR2A IKZF1 IKZF2 RUNX3 YTHDF3-AS1 ENSG00000261542 YTHDF3 GC08P063145
GH08I063316 Enhancer 0.2 ENCODE 5.7 -149.1 -149122 2.3 YTHDF3-AS1 LOC105375873 IFITM8P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around YTHDF3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for YTHDF3-AS1 Gene

Genomic Locations for YTHDF3-AS1 Gene
chr8:63,167,725-63,168,442
(GRCh38/hg38)
Size:
718 bases
Orientation:
Minus strand
chr8:64,080,284-64,081,001
(GRCh37/hg19)

Genomic View for YTHDF3-AS1 Gene

Genes around YTHDF3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
YTHDF3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for YTHDF3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for YTHDF3-AS1 Gene

Proteins for YTHDF3-AS1 Gene

Post-translational modifications for YTHDF3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for YTHDF3-AS1 Gene

Domains & Families for YTHDF3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for YTHDF3-AS1 Gene

Function for YTHDF3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for YTHDF3-AS1 Gene

Localization for YTHDF3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for YTHDF3-AS1 Gene

Pathways & Interactions for YTHDF3-AS1 Gene

SuperPathways for YTHDF3-AS1 Gene

No Data Available

Interacting Proteins for YTHDF3-AS1 Gene

Gene Ontology (GO) - Biological Process for YTHDF3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for YTHDF3-AS1 Gene

Drugs & Compounds for YTHDF3-AS1 Gene

No Compound Related Data Available

Transcripts for YTHDF3-AS1 Gene

mRNA/cDNA for YTHDF3-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for YTHDF3-AS1 Gene

No ASD Table

Relevant External Links for YTHDF3-AS1 Gene

GeneLoc Exon Structure for
YTHDF3-AS1
ECgene alternative splicing isoforms for
YTHDF3-AS1

Expression for YTHDF3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for YTHDF3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for YTHDF3-AS1 Gene

This gene is overexpressed in Testis (x4.1).
genes like me logo Genes that share expression patterns with YTHDF3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for YTHDF3-AS1 Gene

Orthologs for YTHDF3-AS1 Gene

Evolution for YTHDF3-AS1 Gene

ENSEMBL:
Gene Tree for YTHDF3-AS1 (if available)
TreeFam:
Gene Tree for YTHDF3-AS1 (if available)

No data available for Orthologs for YTHDF3-AS1 Gene

Paralogs for YTHDF3-AS1 Gene

No data available for Paralogs for YTHDF3-AS1 Gene

Variants for YTHDF3-AS1 Gene

Sequence variations from dbSNP and Humsavar for YTHDF3-AS1 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1001090929 -- 63,168,918(-) C/T upstream_transcript_variant
rs1001122030 -- 63,168,672(-) G/C upstream_transcript_variant
rs1002091568 -- 63,169,860(-) A/G upstream_transcript_variant
rs1002883763 -- 63,169,023(-) A/G upstream_transcript_variant
rs1004001362 -- 63,167,523(-) A/C downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for YTHDF3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv611448 CNV loss 21841781

Additional Variant Information for YTHDF3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
YTHDF3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for YTHDF3-AS1 Gene

Disorders for YTHDF3-AS1 Gene

Additional Disease Information for YTHDF3-AS1

No disorders were found for YTHDF3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for YTHDF3-AS1 Gene

Publications for YTHDF3-AS1 Gene

No publications were found for YTHDF3-AS1 Gene.

Products for YTHDF3-AS1 Gene

Sources for YTHDF3-AS1 Gene

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