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Aliases for YBX3P1 Gene

Aliases for YBX3P1 Gene

  • Y-Box Binding Protein 3 Pseudogene 1 2 3
  • Cold Shock Domain Protein A Pseudogene 1 2 3
  • CSDAP1 3

External Ids for YBX3P1 Gene

Previous HGNC Symbols for YBX3P1 Gene

  • CSDAP1

Summaries for YBX3P1 Gene

GeneCards Summary for YBX3P1 Gene

YBX3P1 (Y-Box Binding Protein 3 Pseudogene 1) is a Pseudogene.

Additional gene information for YBX3P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for YBX3P1 Gene

Genomics for YBX3P1 Gene

GeneHancer (GH) Regulatory Elements for YBX3P1 Gene

Promoters and enhancers for YBX3P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I031569 Promoter 0.6 Ensembl 550.8 +0.1 123 0.4 EZH2 YBX3P1 ARMC5 ENSG00000260740 ENSG00000278885 FRG2KP
GH16I031568 Enhancer 0.4 Ensembl 550.8 +0.6 623 0.2 CTCF EZH2 YBX3P1 ENSG00000278885 ARMC5 ENSG00000260740 FRG2KP
GH16I031712 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 4.8 -144.7 -144715 3.3 PKNOX1 SMAD1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF213 ZNF720 CLUHP3 STX4 RNF40 ENSG00000260267 YBX3P1 GC16M031728
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around YBX3P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for YBX3P1 Gene

Genomic Locations for YBX3P1 Gene
chr16:31,567,767-31,569,524
(GRCh38/hg38)
Size:
1,758 bases
Orientation:
Minus strand
chr16:31,579,088-31,580,845
(GRCh37/hg19)

Genomic View for YBX3P1 Gene

Genes around YBX3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
YBX3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for YBX3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for YBX3P1 Gene

Proteins for YBX3P1 Gene

Post-translational modifications for YBX3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for YBX3P1 Gene

Domains & Families for YBX3P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for YBX3P1 Gene

Function for YBX3P1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for YBX3P1 Gene

Localization for YBX3P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for YBX3P1 Gene

Pathways & Interactions for YBX3P1 Gene

SuperPathways for YBX3P1 Gene

No Data Available

Interacting Proteins for YBX3P1 Gene

Gene Ontology (GO) - Biological Process for YBX3P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for YBX3P1 Gene

Drugs & Compounds for YBX3P1 Gene

No Compound Related Data Available

Transcripts for YBX3P1 Gene

mRNA/cDNA for YBX3P1 Gene

(1) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:

Unigene Clusters for YBX3P1 Gene

Y box binding protein 3 pseudogene 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for YBX3P1 Gene

No ASD Table

Relevant External Links for YBX3P1 Gene

GeneLoc Exon Structure for
YBX3P1
ECgene alternative splicing isoforms for
YBX3P1

Expression for YBX3P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for YBX3P1 Gene

mRNA differential expression in normal tissues according to GTEx for YBX3P1 Gene

This gene is overexpressed in Muscle - Skeletal (x17.0) and Testis (x16.3).

NURSA nuclear receptor signaling pathways regulating expression of YBX3P1 Gene:

YBX3P1

SOURCE GeneReport for Unigene cluster for YBX3P1 Gene:

Hs.650902
genes like me logo Genes that share expression patterns with YBX3P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for YBX3P1 Gene

Orthologs for YBX3P1 Gene

No data available for Orthologs and Evolution for YBX3P1 Gene

Paralogs for YBX3P1 Gene

No data available for Paralogs for YBX3P1 Gene

Variants for YBX3P1 Gene

Sequence variations from dbSNP and Humsavar for YBX3P1 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000978677 -- 31,568,373(-) G/T non_coding_transcript_variant
rs1001641826 -- 31,567,501(-) G/T downstream_transcript_variant
rs1001880738 -- 31,568,136(-) C/A non_coding_transcript_variant
rs1001980392 -- 31,568,782(-) G/A non_coding_transcript_variant
rs1002080407 -- 31,567,830(-) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for YBX3P1 Gene

Variant ID Type Subtype PubMed ID
nsv833195 CNV loss 17160897
nsv1060240 CNV gain 25217958
esv3892828 CNV gain 25118596
esv3638403 CNV gain 21293372
esv3638402 CNV gain 21293372
esv3570465 CNV gain 25503493
esv2714195 CNV deletion 23290073
esv2658959 CNV deletion 23128226

Additional Variant Information for YBX3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
YBX3P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for YBX3P1 Gene

Disorders for YBX3P1 Gene

Additional Disease Information for YBX3P1

No disorders were found for YBX3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for YBX3P1 Gene

Publications for YBX3P1 Gene

  1. Assignment of a human cold shock domain protein A intronless pseudogene (CSDAP1) to human chromosome 16 band p11.2 by in situ hybridization. (PMID: 10343102) Argyrokastritis A … Moschonas NK (Cytogenetics and cell genetics 1999) 2 3 58

Products for YBX3P1 Gene

Sources for YBX3P1 Gene

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