Aliases for YBX1P1 Gene

Aliases for YBX1P1 Gene

  • Y-Box Binding Protein 1 Pseudogene 1 2 3 5
  • Nuclease Sensitive Element Binding Protein 1 Pseudogene 2 3
  • PSDBPB1 3
  • NSEP1P 3

External Ids for YBX1P1 Gene

Previous HGNC Symbols for YBX1P1 Gene

  • NSEP1P

Previous GeneCards Identifiers for YBX1P1 Gene

  • GC14M065550
  • GC14M066480

Summaries for YBX1P1 Gene

GeneCards Summary for YBX1P1 Gene

YBX1P1 (Y-Box Binding Protein 1 Pseudogene 1) is a Pseudogene.

Additional gene information for YBX1P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for YBX1P1 Gene

Genomics for YBX1P1 Gene

GeneHancer (GH) Regulatory Elements for YBX1P1 Gene

Promoters and enhancers for YBX1P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J066013 Promoter 0.3 Ensembl 500.7 +0.2 232 0.6 RF01045-041 YBX1P1 lnc-MAX-16 piR-54375-002
GH14J065333 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.1 +677.8 677804 5.2 ZNF217 JUND FOS KLF4 GATAD2B CTBP1 HDAC2 ZNF341 POLR2A BCL11A MIR4708 lnc-MAX-9 FUT8 YBX1P1 LINC02324 lnc-FUT8-4
GH14J066045 Enhancer 0.8 Ensembl ENCODE 11.7 -31.9 -31868 1.2 USF1 NCOR1 TAL1 TCF12 PRDM10 USF2 MITF TOE1 RAD51 PHF20 HSALNG0101987 YBX1P1 GPHN piR-31937-070
GH14J065860 Enhancer 0.9 Ensembl ENCODE dbSUPER 10 +149.6 149632 8.2 ATF2 CREB1 POLR2A NRF1 NFIB JUND ZNF24 NR2C1 ZNF680 ATF7 YBX1P1 piR-48799-038 piR-58308-114 NCOA4P1
GH14J065832 Enhancer 0.9 Ensembl CraniofacialAtlas dbSUPER 9.8 +179.7 179733 3.2 CTCF ZIC2 RFX1 SMC3 TCF12 FOXP2 JUN RAD21 JUND FOS YBX1P1 piR-58308-114 lnc-FUT8-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around YBX1P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for YBX1P1 Gene

Genomic Locations for YBX1P1 Gene
chr14:66,012,433-66,013,933
(GRCh38/hg38)
Size:
1,501 bases
Orientation:
Minus strand
chr14:66,479,149-66,480,644
(GRCh37/hg19)
Size:
1,496 bases
Orientation:
Minus strand

Genomic View for YBX1P1 Gene

Genes around YBX1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
YBX1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for YBX1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for YBX1P1 Gene

Proteins for YBX1P1 Gene

Post-translational modifications for YBX1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for YBX1P1 Gene

Domains & Families for YBX1P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for YBX1P1 Gene

Function for YBX1P1 Gene

Phenotypes From GWAS Catalog for YBX1P1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for YBX1P1 Gene

Localization for YBX1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for YBX1P1 Gene

Pathways & Interactions for YBX1P1 Gene

PathCards logo

SuperPathways for YBX1P1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for YBX1P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for YBX1P1 Gene

Drugs & Compounds for YBX1P1 Gene

No Compound Related Data Available

Transcripts for YBX1P1 Gene

mRNA/cDNA for YBX1P1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for YBX1P1 Gene

No ASD Table

Relevant External Links for YBX1P1 Gene

GeneLoc Exon Structure for
YBX1P1

Expression for YBX1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for YBX1P1 Gene

genes like me logo Genes that share expression patterns with YBX1P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for YBX1P1 Gene

Orthologs for YBX1P1 Gene

Evolution for YBX1P1 Gene

ENSEMBL:
Gene Tree for YBX1P1 (if available)
TreeFam:
Gene Tree for YBX1P1 (if available)

No data available for Orthologs for YBX1P1 Gene

Paralogs for YBX1P1 Gene

No data available for Paralogs for YBX1P1 Gene

Variants for YBX1P1 Gene

Additional Variant Information for YBX1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
YBX1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for YBX1P1 Gene

Disorders for YBX1P1 Gene

Additional Disease Information for YBX1P1

Genetic Association Database
(GAD)

No disorders were found for YBX1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for YBX1P1 Gene

Publications for YBX1P1 Gene

  1. Two human genes isolated by a novel method encode DNA-binding proteins containing a common region of homology. (PMID: 2977358) Sakura H … Ishii S (Gene 1988) 2 3 54
  2. Characterization of the gene for dbpA, a family member of the nucleic-acid-binding proteins containing a cold-shock domain. (PMID: 7628487) Kudo S … Fukuda M (European journal of biochemistry 1995) 3 54

Products for YBX1P1 Gene

Sources for YBX1P1 Gene