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Aliases for XXYLT1-AS1 Gene

Subcategory (RNA class) for XXYLT1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for XXYLT1-AS1 Gene

  • XXYLT1 Antisense RNA 1 2 3 5
  • XXYLT1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for XXYLT1-AS1 Gene

Previous GeneCards Identifiers for XXYLT1-AS1 Gene

  • GC03P194816

Summaries for XXYLT1-AS1 Gene

GeneCards Summary for XXYLT1-AS1 Gene

XXYLT1-AS1 (XXYLT1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for XXYLT1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for XXYLT1-AS1 Gene

Genomics for XXYLT1-AS1 Gene

GeneHancer (GH) Regulatory Elements for XXYLT1-AS1 Gene

Promoters and enhancers for XXYLT1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I195093 Enhancer 1.1 Ensembl ENCODE dbSUPER 550.8 +0.3 279 2.3 NCOA3 EBF1 ZIC2 HIC1 ZFHX2 POLR2A ZNF366 NFATC1 ZSCAN5C ATF7 XXYLT1-AS1 XXYLT1-AS2 MIR3137 XXYLT1
GH03I195115 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.9 +24.3 24311 5.9 ATF1 FOXA2 ARNT TCF12 GATA2 FOS ATF7 NCOA1 REST ZNF592 LSG1 SDHAP1 XXYLT1-AS2 LINC00969 SDHAP2 XXYLT1 RN7SL36P XXYLT1-AS1 ACAP2 FAM43A
GH03I195028 Enhancer 1.4 FANTOM5 Ensembl ENCODE 11.5 -62.6 -62637 6.2 PKNOX1 CLOCK FOXA2 ZBTB7B YY1 ATF7 FOS DEK RXRA SP5 XXYLT1-AS1 XXYLT1 PIR39689 LOC105374295
GH03I195185 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.7 +92.5 92498 3.9 HDGF PKNOX1 ARNT BMI1 ZBTB7B RAD21 ZNF366 RCOR1 ETV6 EGR2 RNU6-25P XXYLT1 XXYLT1-AS2 RN7SL36P XXYLT1-AS1 GC03P195215 LOC105374296
GH03I195203 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.7 +110.1 110147 2.7 HDGF ATF1 PKNOX1 SMAD1 FEZF1 ATF7 ZNF592 ATF4 MAFF ZNF610 RN7SL36P XXYLT1-AS2 XXYLT1 XXYLT1-AS1 ENSG00000271662 GC03P195215 LOC105374296
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around XXYLT1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for XXYLT1-AS1 Gene

Genomic Locations for XXYLT1-AS1 Gene
chr3:195,094,588-195,096,057
(GRCh38/hg38)
Size:
1,470 bases
Orientation:
Plus strand
chr3:194,815,317-194,816,786
(GRCh37/hg19)

Genomic View for XXYLT1-AS1 Gene

Genes around XXYLT1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
XXYLT1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for XXYLT1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for XXYLT1-AS1 Gene

Proteins for XXYLT1-AS1 Gene

Post-translational modifications for XXYLT1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for XXYLT1-AS1 Gene

Domains & Families for XXYLT1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for XXYLT1-AS1 Gene

Function for XXYLT1-AS1 Gene

Phenotypes From GWAS Catalog for XXYLT1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for XXYLT1-AS1 Gene

Localization for XXYLT1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for XXYLT1-AS1 Gene

Pathways & Interactions for XXYLT1-AS1 Gene

SuperPathways for XXYLT1-AS1 Gene

No Data Available

Interacting Proteins for XXYLT1-AS1 Gene

Gene Ontology (GO) - Biological Process for XXYLT1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for XXYLT1-AS1 Gene

Drugs & Compounds for XXYLT1-AS1 Gene

No Compound Related Data Available

Transcripts for XXYLT1-AS1 Gene

mRNA/cDNA for XXYLT1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for XXYLT1-AS1 Gene

No ASD Table

Relevant External Links for XXYLT1-AS1 Gene

GeneLoc Exon Structure for
XXYLT1-AS1
ECgene alternative splicing isoforms for
XXYLT1-AS1

Expression for XXYLT1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for XXYLT1-AS1 Gene

genes like me logo Genes that share expression patterns with XXYLT1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for XXYLT1-AS1 Gene

Orthologs for XXYLT1-AS1 Gene

Evolution for XXYLT1-AS1 Gene

ENSEMBL:
Gene Tree for XXYLT1-AS1 (if available)
TreeFam:
Gene Tree for XXYLT1-AS1 (if available)

No data available for Orthologs for XXYLT1-AS1 Gene

Paralogs for XXYLT1-AS1 Gene

No data available for Paralogs for XXYLT1-AS1 Gene

Variants for XXYLT1-AS1 Gene

Sequence variations from dbSNP and Humsavar for XXYLT1-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000473409 -- 195,095,076(+) C/T intron_variant
rs1000823477 -- 195,096,163(+) C/T downstream_transcript_variant
rs1001613221 -- 195,095,373(+) G/A non_coding_transcript_variant
rs1002207223 -- 195,095,179(+) C/T intron_variant
rs1002402272 -- 195,096,437(+) G/C downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for XXYLT1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv950297 CNV deletion 24416366
nsv1009796 CNV gain 25217958
nsv1001492 CNV gain 25217958
esv3599226 CNV gain 21293372

Additional Variant Information for XXYLT1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
XXYLT1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for XXYLT1-AS1 Gene

Disorders for XXYLT1-AS1 Gene

Additional Disease Information for XXYLT1-AS1

No disorders were found for XXYLT1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for XXYLT1-AS1 Gene

Publications for XXYLT1-AS1 Gene

No publications were found for XXYLT1-AS1 Gene.

Products for XXYLT1-AS1 Gene

Sources for XXYLT1-AS1 Gene

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