Aliases for XRCC6P5 Gene

Aliases for XRCC6P5 Gene

  • X-Ray Repair Cross Complementing 6 Pseudogene 5 2 3 5
  • X-Ray Repair Complementing Defective Repair In Chinese Hamster Cells 6 Pseudogene 5 2 3
  • X-Ray Repair Complementing Defective Repair Pseudogene 3
  • DNA Repair Protein 3

External Ids for XRCC6P5 Gene

Previous GeneCards Identifiers for XRCC6P5 Gene

  • GC0XM098718

Summaries for XRCC6P5 Gene

GeneCards Summary for XRCC6P5 Gene

XRCC6P5 (X-Ray Repair Cross Complementing 6 Pseudogene 5) is a Pseudogene.

Additional gene information for XRCC6P5 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for XRCC6P5 Gene

Genomics for XRCC6P5 Gene

GeneHancer (GH) Regulatory Elements for XRCC6P5 Gene

Promoters and enhancers for XRCC6P5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ099939 Enhancer 0.2 Ensembl 500.7 +0.0 42 0.4 XRCC6P5 lnc-PCDH19-3
GH0XJ099922 Enhancer 0.3 Ensembl 0.4 +17.0 17042 0.4 GATA2 piR-59425-033 XRCC6P5 B3GNT2P1
GH0XJ100098 Enhancer 0.3 Ensembl 0.1 -159.1 -159058 0.6 CTCF GATA2 ENSG00000252296 XRCC6P5
GH0XJ100083 Enhancer 0.3 Ensembl 0.1 -143.8 -143758 0.8 FOS ENSG00000252296 XRCC6P5
GH0XJ100080 Enhancer 0.3 Ensembl 0.1 -141.3 -141258 0.2 ZNF274 ENSG00000252296 XRCC6P5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around XRCC6P5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for XRCC6P5 Gene

Genomic Locations for XRCC6P5 Gene
chrX:99,461,602-99,939,843
(GRCh38/hg38)
Size:
478,242 bases
Orientation:
Minus strand
chrX:98,716,600-99,194,841
(GRCh37/hg19)
Size:
478,242 bases
Orientation:
Minus strand

Genomic View for XRCC6P5 Gene

Genes around XRCC6P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
XRCC6P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for XRCC6P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for XRCC6P5 Gene

Proteins for XRCC6P5 Gene

Post-translational modifications for XRCC6P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for XRCC6P5 Gene

Domains & Families for XRCC6P5 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for XRCC6P5 Gene

Function for XRCC6P5 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for XRCC6P5 Gene

Localization for XRCC6P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for XRCC6P5 Gene

Pathways & Interactions for XRCC6P5 Gene

PathCards logo

SuperPathways for XRCC6P5 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for XRCC6P5 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for XRCC6P5 Gene

Drugs & Compounds for XRCC6P5 Gene

No Compound Related Data Available

Transcripts for XRCC6P5 Gene

mRNA/cDNA for XRCC6P5 Gene

1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for XRCC6P5 Gene

No ASD Table

Relevant External Links for XRCC6P5 Gene

GeneLoc Exon Structure for
XRCC6P5

Expression for XRCC6P5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for XRCC6P5 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for XRCC6P5

SOURCE GeneReport for Unigene cluster for XRCC6P5 Gene:

Hs.706599
genes like me logo Genes that share expression patterns with XRCC6P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for XRCC6P5 Gene

Orthologs for XRCC6P5 Gene

Evolution for XRCC6P5 Gene

ENSEMBL:
Gene Tree for XRCC6P5 (if available)
TreeFam:
Gene Tree for XRCC6P5 (if available)

No data available for Orthologs for XRCC6P5 Gene

Paralogs for XRCC6P5 Gene

No data available for Paralogs for XRCC6P5 Gene

Variants for XRCC6P5 Gene

Structural Variations from Database of Genomic Variants (DGV) for XRCC6P5 Gene

Variant ID Type Subtype PubMed ID
esv1335652 CNV deletion 17803354
esv1496918 OTHER inversion 17803354
esv2671975 CNV deletion 23128226
esv2676198 CNV deletion 23128226
esv2740352 CNV deletion 23290073
esv2740353 CNV deletion 23290073
esv2740354 CNV deletion 23290073
esv2752340 CNV gain 17911159
esv3559143 CNV deletion 23714750
nsv1132247 CNV deletion 24896259
nsv1139413 CNV deletion 24896259
nsv1140048 CNV duplication 24896259
nsv1151826 CNV duplication 26484159
nsv510550 OTHER sequence alteration 20534489

Additional Variant Information for XRCC6P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
XRCC6P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for XRCC6P5 Gene

Disorders for XRCC6P5 Gene

Additional Disease Information for XRCC6P5

No disorders were found for XRCC6P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for XRCC6P5 Gene

Publications for XRCC6P5 Gene

  1. The association of DNA repair gene polymorphisms with the development and progression of renal cell carcinoma. (PMID: 17712032) Sakano S … Naito K (Annals of oncology : official journal of the European Society for Medical Oncology 2007) 3 54

Products for XRCC6P5 Gene

Sources for XRCC6P5 Gene