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Aliases for XRCC6P1 Gene

Aliases for XRCC6P1 Gene

  • X-Ray Repair Cross Complementing 6 Pseudogene 1 2 3 5
  • X-Ray Repair Complementing Defective Repair In Chinese Hamster Cells 6 Pseudogene 1 2 3

External Ids for XRCC6P1 Gene

Previous GeneCards Identifiers for XRCC6P1 Gene

  • GC10M094967

Summaries for XRCC6P1 Gene

GeneCards Summary for XRCC6P1 Gene

XRCC6P1 (X-Ray Repair Cross Complementing 6 Pseudogene 1) is a Pseudogene.

Additional gene information for XRCC6P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for XRCC6P1 Gene

Genomics for XRCC6P1 Gene

GeneHancer (GH) Regulatory Elements for XRCC6P1 Gene

Promoters and enhancers for XRCC6P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J093208 Enhancer 1 Ensembl 607.8 +0.0 27 1.6 ZNF473 ZSCAN21 ZBTB7A TRIM24 SP7 ZNF174 KLF14 ZNF404 CREB1 ZNF488 XRCC6P1 FRA10AC1 PDE6C RPL17P34 MYOF MARK2P9 KIF11 GC10M093106 NIP7P1
GH10J093180 Enhancer 0.9 Ensembl ENCODE 16.6 +28.2 28196 2.7 ZFX SP1 RXRA MGA JUND GABPA ATF3 NR2F2 RAD21 HNF4A XRCC6P1 NIP7P1 GC10M093106
GH10J093198 Enhancer 0.7 ENCODE 13.1 +10.5 10531 1.8 SP1 RXRA GABPA ZBTB20 JUND ZBTB17 ATF3 ZBTB33 NR2C2 NR2F2 XRCC6P1 GC10M093106 NIP7P1
GH10J093124 Enhancer 1.1 Ensembl ENCODE dbSUPER 6.2 +83.8 83815 5.6 IKZF1 IKZF2 CTCF RUNX3 ELF1 TRIM28 RAD21 CBX5 EBF1 ZNF143 XRCC6P1 GC10M093106 NIP7P1
GH10J093189 Enhancer 0.4 Ensembl 15.5 +18.9 18926 2.6 SP1 HNF4A RXRA XRCC6P1 NIP7P1 GC10M093106
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around XRCC6P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for XRCC6P1 Gene

Genomic Locations for XRCC6P1 Gene
chr10:93,206,655-93,209,627
(GRCh38/hg38)
Size:
2,973 bases
Orientation:
Minus strand
chr10:94,966,418-94,969,384
(GRCh37/hg19)
Size:
2,967 bases
Orientation:
Minus strand

Genomic View for XRCC6P1 Gene

Genes around XRCC6P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
XRCC6P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for XRCC6P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for XRCC6P1 Gene

Proteins for XRCC6P1 Gene

Post-translational modifications for XRCC6P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for XRCC6P1 Gene

Domains & Families for XRCC6P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for XRCC6P1 Gene

Function for XRCC6P1 Gene

Phenotypes From GWAS Catalog for XRCC6P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for XRCC6P1 Gene

Localization for XRCC6P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for XRCC6P1 Gene

Pathways & Interactions for XRCC6P1 Gene

PathCards logo

SuperPathways for XRCC6P1 Gene

No Data Available

Interacting Proteins for XRCC6P1 Gene

Gene Ontology (GO) - Biological Process for XRCC6P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for XRCC6P1 Gene

Drugs & Compounds for XRCC6P1 Gene

No Compound Related Data Available

Transcripts for XRCC6P1 Gene

mRNA/cDNA for XRCC6P1 Gene

(3) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for XRCC6P1 Gene

No ASD Table

Relevant External Links for XRCC6P1 Gene

GeneLoc Exon Structure for
XRCC6P1
ECgene alternative splicing isoforms for
XRCC6P1

Expression for XRCC6P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for XRCC6P1 Gene

mRNA differential expression in normal tissues according to GTEx for XRCC6P1 Gene

This gene is overexpressed in Liver (x26.0), Testis (x7.2), and Adipose - Visceral (Omentum) (x5.8).

NURSA nuclear receptor signaling pathways regulating expression of XRCC6P1 Gene:

XRCC6P1
genes like me logo Genes that share expression patterns with XRCC6P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for XRCC6P1 Gene

Orthologs for XRCC6P1 Gene

Evolution for XRCC6P1 Gene

ENSEMBL:
Gene Tree for XRCC6P1 (if available)
TreeFam:
Gene Tree for XRCC6P1 (if available)

No data available for Orthologs for XRCC6P1 Gene

Paralogs for XRCC6P1 Gene

No data available for Paralogs for XRCC6P1 Gene

Variants for XRCC6P1 Gene

Additional Variant Information for XRCC6P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
XRCC6P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for XRCC6P1 Gene

Disorders for XRCC6P1 Gene

Additional Disease Information for XRCC6P1

No disorders were found for XRCC6P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for XRCC6P1 Gene

Publications for XRCC6P1 Gene

No publications were found for XRCC6P1 Gene.

Products for XRCC6P1 Gene

Sources for XRCC6P1 Gene

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