Aliases for XRCC3 Gene
Aliases for XRCC3 Gene
External Ids for XRCC3 Gene
- HGNC: 12830
- Entrez Gene: 7517
- Ensembl: ENSG00000126215
- OMIM: 600675
- UniProtKB: O43542
Previous GeneCards Identifiers for XRCC3 Gene
- GC14M101555
- GC14M097979
- GC14M102153
- GC14M103233
- GC14M104163
- GC14M084342
Summaries for XRCC3 Gene
-
This gene encodes a member of the RecA/Rad51-related protein family that participates in homologous recombination to maintain chromosome stability and repair DNA damage. This gene functionally complements Chinese hamster irs1SF, a repair-deficient mutant that exhibits hypersensitivity to a number of different DNA-damaging agents and is chromosomally unstable. A rare microsatellite polymorphism in this gene is associated with cancer in patients of varying radiosensitivity. Alternatively spliced transcript variants encoding the same protein have been identified. [provided by RefSeq, Jul 2008]
GeneCards Summary for XRCC3 Gene
XRCC3 (X-Ray Repair Cross Complementing 3) is a Protein Coding gene. Diseases associated with XRCC3 include Melanoma, Cutaneous Malignant 6 and Breast Cancer. Among its related pathways are DNA Double-Strand Break Repair and Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA). Gene Ontology (GO) annotations related to this gene include DNA-dependent ATPase activity and crossover junction endodeoxyribonuclease activity. An important paralog of this gene is RAD51C.
UniProtKB/Swiss-Prot for XRCC3 Gene
-
Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions. Part of the RAD21 paralog protein complex CX3 which acts in the BRCA1-BRCA2-dependent HR pathway. Upon DNA damage, CX3 acts downstream of RAD51 recruitment; the complex binds predominantly to the intersection of the four duplex arms of the Holliday junction (HJ) and to junctions of replication forks. Involved in HJ resolution and thus in processing HR intermediates late in the DNA repair process; the function may be linked to the CX3 complex and seems to involve GEN1 during mitotic cell cycle progression. Part of a PALB2-scaffolded HR complex containing BRCA2 and RAD51C and which is thought to play a role in DNA repair by HR. Plays a role in regulating mitochondrial DNA copy number under conditions of oxidative stress in the presence of RAD51 and RAD51C.
Additional gene information for XRCC3 Gene
- Monarch Initiative
- Search for XRCC3 at DataMed
- Search for XRCC3 at HumanCyc
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for XRCC3 Gene
Genomics for XRCC3 Gene
GeneHancer (GH) Regulatory Elements for XRCC3 Gene
Promoters and enhancers for XRCC3 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around XRCC3 on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the XRCC3 gene promoter:
Regulatory Element Products
Genomic Locations for XRCC3 Gene
Genomic Locations for XRCC3 Gene
- chr14:103,697,608-103,715,504
- (GRCh38/hg38)
- Size:
- 17,897 bases
- Orientation:
- Minus strand
- chr14:104,163,946-104,181,841
- (GRCh37/hg19)
Genomic View for XRCC3 Gene
Genes around XRCC3 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 14q32.33 by Ensembl
- 14q32.33 by Entrez Gene
- 14q32.3 by HGNC
XRCC3 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for XRCC3 Gene
Proteins for XRCC3 Gene
-
Protein details for XRCC3 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- O43542-XRCC3_HUMAN
- Recommended name:
- DNA repair protein XRCC3
- Protein Accession:
- O43542
- O43568
- Q9BU18
Protein attributes for XRCC3 Gene
- Size:
- 346 amino acids
- Molecular mass:
- 37850 Da
- Quaternary structure:
-
- Interacts with RAD51C and RAD51. Part of the CX3 complex consisting of RAD51C and XRCC3; the complex has a ring-like structure arranged into a flat disc around a central channel; CX3 can interact with RAD51 in vitro. Forms a complex with FANCD2, BRCA2 and phosphorylated FANCG. Interacts with SWSAP1 and ZSWIM7; involved in homologous recombination repair. Interacts directly with PALB2 which may serve as a scaffold for a HR complex containing PALB2, BRCA2, RAD51C, RAD51 and XRCC3.
Protein Expression for XRCC3 Gene
Post-translational modifications for XRCC3 Gene
Other Protein References for XRCC3 Gene
Antibody Products
- Novus Biologicals Antibodies for XRCC3
-
Abcam antibodies for XRCC3
- Invitrogen Antibodies for XRCC3
- GeneTex XRCC3 antibody for XRCC3
-
Santa Cruz Biotechnology (SCBT) Antibodies for XRCC3
- Sino Biological Antibodies for XRCC3
Protein Products
- Search Origene for MassSpec and Protein Over-expression Lysates for XRCC3
- Origene Custom Protein Services for XRCC3
- Search GeneTex for Proteins for XRCC3
-
Abcam proteins for XRCC3
Assay Products
No data available for DME Specific Peptides for XRCC3 Gene
Domains & Families for XRCC3 Gene
Gene Families for XRCC3 Gene
- Human Protein Atlas (HPA):
-
- Cancer-related genes
- Disease related genes
- Predicted intracellular proteins
Protein Domains for XRCC3 Gene
- InterPro:
- ProtoNet:
Suggested Antigen Peptide Sequences for XRCC3 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
O43542- Family:
-
- Belongs to the RecA family. RAD51 subfamily.
Function for XRCC3 Gene
Molecular function for XRCC3 Gene
- GENATLAS Biochemistry:
- repair X-ray defect,complementing defect in CHO cells,3,involved in recombinational repair,interacting with RAD51 for maintenance of genomic integrity
- UniProtKB/Swiss-Prot Function:
- Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions. Part of the RAD21 paralog protein complex CX3 which acts in the BRCA1-BRCA2-dependent HR pathway. Upon DNA damage, CX3 acts downstream of RAD51 recruitment; the complex binds predominantly to the intersection of the four duplex arms of the Holliday junction (HJ) and to junctions of replication forks. Involved in HJ resolution and thus in processing HR intermediates late in the DNA repair process; the function may be linked to the CX3 complex and seems to involve GEN1 during mitotic cell cycle progression. Part of a PALB2-scaffolded HR complex containing BRCA2 and RAD51C and which is thought to play a role in DNA repair by HR. Plays a role in regulating mitochondrial DNA copy number under conditions of oxidative stress in the presence of RAD51 and RAD51C.
- UniProtKB/Swiss-Prot Induction:
- Stress-induced increase in the mitochondrial levels is seen.
Phenotypes From GWAS Catalog for XRCC3 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000150 | recombinase activity | IBA | -- |
| GO:0000166 | nucleotide binding | IEA | -- |
| GO:0000400 | contributes_to four-way junction DNA binding | IDA | 20207730 |
| GO:0003677 | DNA binding | IEA | -- |
| GO:0003690 | double-stranded DNA binding | IBA | -- |
Phenotypes for XRCC3 Gene
- MGI mutant phenotypes for XRCC3:
- inferred from 1 alleles
- GenomeRNAi human phenotypes for XRCC3:
-
- Increased viability
- Increased vaccinia virus (VACV) infection
- Decreased human papilloma virus 16 (HPV16) pseudovirus infection
- Synthetic lethal with MLN4924 (a NAE inhibitor)
- Decreased shRNA abundance
- Increased viability with MLN4924 (a NAE inhibitor)
- Upregulation of Wnt/beta-catenin pathway after WNT3A stimulation
- Increased Nanog expression
- Synthetic lethal with cisplatin
Animal Models for XRCC3 Gene
- MGI Knock Outs for XRCC3:
-
- Xrcc3 tm1b(KOMP)Mbp
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for XRCC3
-
-
ViGene Biosciences lentiviral particle packaged cDNA for XRCC3 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for XRCC3 gene
- Search ViGene Biosciences for XRCC3
CRISPR Products
-
OriGene CRISPR knockouts for XRCC3
- genomics-online: gRNA clones - Search results for 79 available XRCC3 gene related products
- Overview of 79 available XRCC3 gene related products
- Applied Biological Materials CRISPR for XRCC3
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for XRCC3
- GenScript: Design CRISPR guide RNA sequences for XRCC3
miRNA for XRCC3 Gene
- miRTarBase miRNAs that target XRCC3
-
- hsa-mir-6746-3p (MIRT114265)
- hsa-mir-6736-5p (MIRT482697)
- hsa-mir-4651 (MIRT482698)
- hsa-mir-4701-3p (MIRT482699)
- hsa-mir-1262 (MIRT482700)
- hsa-mir-6858-5p (MIRT482701)
- hsa-mir-4689 (MIRT482702)
- hsa-mir-6748-5p (MIRT482703)
- hsa-mir-6769b-5p (MIRT482704)
- hsa-mir-6769a-5p (MIRT482705)
- hsa-mir-4710 (MIRT482706)
- hsa-mir-6134 (MIRT482707)
- hsa-mir-765 (MIRT482708)
- hsa-mir-4784 (MIRT482709)
- hsa-mir-3150b-3p (MIRT482710)
- hsa-mir-4257 (MIRT482711)
- hsa-mir-1912 (MIRT482712)
- hsa-mir-1295b-5p (MIRT482713)
- hsa-mir-1277-5p (MIRT503290)
- hsa-mir-190a-3p (MIRT503291)
- hsa-mir-5011-5p (MIRT503292)
- hsa-mir-5580-3p (MIRT503293)
- hsa-mir-574-5p (MIRT508304)
- hsa-mir-6867-5p (MIRT508305)
- hsa-mir-223-5p (MIRT508306)
- hsa-mir-511-3p (MIRT508307)
- hsa-mir-548t-3p (MIRT514558)
- hsa-mir-548ap-3p (MIRT514559)
- hsa-mir-548aa (MIRT514560)
- hsa-mir-548z (MIRT514561)
- hsa-mir-548h-3p (MIRT514562)
- hsa-mir-548d-3p (MIRT514563)
- hsa-mir-548bb-3p (MIRT514564)
- hsa-mir-548ac (MIRT514565)
- hsa-mir-6075 (MIRT609254)
- hsa-mir-4673 (MIRT609255)
- hsa-mir-4645-5p (MIRT609256)
- hsa-mir-4692 (MIRT609257)
- hsa-mir-4514 (MIRT609258)
- hsa-mir-6511a-5p (MIRT609259)
- hsa-mir-1910-3p (MIRT609260)
- hsa-mir-4484 (MIRT613419)
- hsa-mir-6768-3p (MIRT613420)
- hsa-mir-548an (MIRT613421)
- hsa-mir-410-3p (MIRT707104)
- hsa-mir-127-3p (MIRT734465)
miRNA Products
- Search ViGene Biosciences for XRCC3
Inhibitory RNA Products
- Origene RNAi, sirna, and shrna products in human, mouse, rat for XRCC3
- Browse OriGene Inhibitory RNA Products For XRCC3
- genomics-online: shRNA clones - Search results for 79 available XRCC3 gene related products
- Overview of 79 available XRCC3 gene related products
-
ViGene Biosciences ready-to-package AAV shRNAs for XRCC3 gene
Clone Products
-
OriGene ORF clones in human for XRCC3
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- VectorBuilder custom plasmid, inducible vectors for XRCC3
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for XRCC3
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for XRCC3
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Cell Line Products
-
ViGene Biosciences adenoviral particle packaged cDNA for XRCC3 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for XRCC3 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for XRCC3 gene
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for XRCC3 Gene
Localization for XRCC3 Gene
Subcellular locations from UniProtKB/Swiss-Prot for XRCC3 Gene
- Nucleus. Cytoplasm. Cytoplasm, perinuclear region. Mitochondrion. Note=Accumulates in discrete nuclear foci prior to DNA damage, and these foci persist throughout the time course of DNA repair.
| Compartment | Confidence |
|---|---|
| mitochondrion | 5 |
| nucleus | 5 |
| cytosol | 5 |
- Nucleus (4)
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000784 | nuclear chromosome, telomeric region | IC | 15507207 |
| GO:0005634 | nucleus | IDA | 16215984 |
| GO:0005654 | nucleoplasm | TAS | -- |
| GO:0005657 | replication fork | IDA | 20207730 |
| GO:0005737 | cytoplasm | IDA,IEA | 16215984 |
Pathways & Interactions for XRCC3 Gene
Pathways by source for XRCC3 Gene
2 BioSystems pathways for XRCC3 Gene
1 PharmGKB pathway for XRCC3 Gene
1 KEGG pathway for XRCC3 Gene
Interacting Proteins for XRCC3 Gene
Selected Interacting proteins:
ENSP00000343392
O43542-XRCC3_HUMAN
for XRCC3 Gene via
STRING
IID
UniProtKB
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000707 | meiotic DNA recombinase assembly | IBA | -- |
| GO:0000722 | telomere maintenance via recombination | IMP | 15507207 |
| GO:0000724 | double-strand break repair via homologous recombination | IMP | 23149936 |
| GO:0000731 | DNA synthesis involved in DNA repair | TAS | -- |
| GO:0000732 | strand displacement | TAS | -- |
No data available for SIGNOR curated interactions for XRCC3 Gene
Drugs & Compounds for XRCC3 Gene
| Name | Status | Disease Links | Group | Role | Mechanism of Action | Clinical Trials |
|---|---|---|---|---|---|---|
| Fluorouracil | Approved | Pharma | RNA processing inhibitor and thymidylate synthase inhibitor | 1970 | ||
| Irinotecan | Approved, Investigational | Pharma | Topoisomerase I inhibitor, TOPO I inhibitor, Topoisomerase 1 Inhibitors | 1181 | ||
| leucovorin | Approved | Nutra | 3402,1193 | |||
| Platinum compounds | Pharma | 0 |
| Name | Synonyms | Role | CAS Number | PubChem IDs | PubMed IDs |
|---|
Transcripts for XRCC3 Gene
mRNA/cDNA for XRCC3 Gene
- (5) REFSEQ mRNAs :
- (11) Additional mRNA sequences :
- (1) Selected AceView cDNA sequences:
- (18) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for XRCC3 Gene
CRISPR Products
-
OriGene CRISPR knockouts for XRCC3
- genomics-online: gRNA clones - Search results for 79 available XRCC3 gene related products
- Overview of 79 available XRCC3 gene related products
- Applied Biological Materials CRISPR for XRCC3
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for XRCC3
- GenScript: Design CRISPR guide RNA sequences for XRCC3
miRNA Products
- Search ViGene Biosciences for XRCC3
Inhibitory RNA Products
- Origene RNAi, sirna, and shrna products in human, mouse, rat for XRCC3
- Browse OriGene Inhibitory RNA Products For XRCC3
- genomics-online: shRNA clones - Search results for 79 available XRCC3 gene related products
- Overview of 79 available XRCC3 gene related products
-
ViGene Biosciences ready-to-package AAV shRNAs for XRCC3 gene
Clone Products
-
OriGene ORF clones in human for XRCC3
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- VectorBuilder custom plasmid, inducible vectors for XRCC3
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for XRCC3
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for XRCC3
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3a | · | 3b | ^ | 4a | · | 4b | · | 4c | ^ | 5a | · | 5b | ^ | 6a | · | 6b | · | 6c | · | 6d | · | 6e | ^ | 7a | · | 7b | · | 7c | ^ | 8a | · | 8b | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | - | - | - | - | - | - | - | - | - | ||||||||||||||||||||||||||||||||||||||
| SP2: | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||
| SP3: | - | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||
| SP4: | - | - | - | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||
| SP5: | - | - | - | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||
| SP6: | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||
| SP7: | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||
| SP8: | - | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||||
| SP9: | - | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||
| SP10: | - | - | |||||||||||||||||||||||||||||||||||||||||||||||
| SP11: | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||
| SP12: | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||
| SP13: |
Expression for XRCC3 Gene
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for XRCC3 Gene
- Elite partner
NURSA nuclear receptor signaling pathways regulating expression of XRCC3 Gene:
XRCC3SOURCE GeneReport for Unigene cluster for XRCC3 Gene:
Hs.592325Evidence on tissue expression from TISSUES for XRCC3 Gene
- Muscle(4.1)
- Blood(2.1)
- Nervous system(2.1)
Primer Products
-
OriGene qPCR primer pairs for XRCC3
-
OriGene qPCR primer pairs and template standards for XRCC3
- genomics-online: primer clones - Search results for 79 available XRCC3 gene related products
- Overview of 79 available XRCC3 gene related products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for XRCC3 Gene
Orthologs for XRCC3 Gene
This gene was present in the common ancestor of eukaryotes.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | XRCC3 33 34 |
|
||
| dog (Canis familiaris) |
Mammalia | XRCC3 33 34 |
|
||
| cow (Bos Taurus) |
Mammalia | XRCC3 33 34 |
|
||
| rat (Rattus norvegicus) |
Mammalia | LOC102551085 33 |
|
||
| mouse (Mus musculus) |
Mammalia | Xrcc3 33 16 34 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | XRCC3 34 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | XRCC3 34 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | XRCC3 33 34 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | XRCC3 34 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | xrcc3 33 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | xrcc3 33 34 |
|
||
| fruit fly (Drosophila melanogaster) |
Insecta | spn-B 33 34 |
|
||
| African malaria mosquito (Anopheles gambiae) |
Insecta | AgaP_AGAP013180 33 |
|
||
| baker's yeast (Saccharomyces cerevisiae) |
Saccharomycetes | RAD57 34 |
|
OneToOne | |
| thale cress (Arabidopsis thaliana) |
eudicotyledons | XRCC3 33 |
|
||
| rice (Oryza sativa) |
Liliopsida | Os02g0562100 33 |
|
||
| bread mold (Neurospora crassa) |
Ascomycetes | NCU01771 33 |
|
||
| fission yeast (Schizosaccharomyces pombe) |
Schizosaccharomycetes | rhp57 33 |
|
- Species where no ortholog for XRCC3 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for XRCC3 Gene
Variants for XRCC3 Gene
| SNP ID | Clin | Chr 14 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs861539 | risk-factor, Cutaneous malignant melanoma 6, Melanoma, cutaneous malignant 6 (CMM6) [MIM:613972] | 103,699,416(-) | G/A | coding_sequence_variant, missense_variant | |
| rs1000105326 | -- | 103,698,087(-) | C/T | 3_prime_UTR_variant | |
| rs1000173903 | -- | 103,697,623(-) | C/T | 3_prime_UTR_variant | |
| rs1000291275 | -- | 103,714,925(-) | C/T | intron_variant | |
| rs1000406236 | -- | 103,714,612(-) | A/T | intron_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2749175 | CNV | deletion | 23290073 |
| esv2760013 | CNV | loss | 17122850 |
| esv3635603 | CNV | gain | 21293372 |
| nsv1054574 | CNV | loss | 25217958 |
| nsv470673 | CNV | loss | 18288195 |
| nsv527425 | CNV | loss | 19592680 |
| nsv566023 | CNV | loss | 21841781 |
| nsv827071 | CNV | gain | 20364138 |
| nsv9171 | CNV | gain | 18304495 |
| nsv952260 | CNV | deletion | 24416366 |
Residual Variation Intolerance Score:
75.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
6.18;
75.92% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for XRCC3 Gene
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for XRCC3 Gene
Disorders for XRCC3 Gene
(14) MalaCards diseases for XRCC3 Gene - From: HGMD, OMIM, ClinVar, GTR, Swiss-Prot, DISEASES, Novoseek, and GeneCards
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| melanoma, cutaneous malignant 6 |
|
|
| breast cancer |
|
|
| cardiomyopathy, familial hypertrophic, 15 |
|
|
| xeroderma pigmentosum, variant type |
|
|
| xeroderma pigmentosum, complementation group d |
|
|
Search XRCC3 in MalaCards
View complete list of genes associated with diseases
UniProtKB/Swiss-Prot
XRCC3_HUMAN- Breast cancer (BC) [MIM:114480]: A common malignancy originating from breast epithelial tissue. Breast neoplasms can be distinguished by their histologic pattern. Invasive ductal carcinoma is by far the most common type. Breast cancer is etiologically and genetically heterogeneous. Important genetic factors have been indicated by familial occurrence and bilateral involvement. Mutations at more than one locus can be involved in different families or even in the same case. {ECO:0000269 PubMed:12023982}. Note=Disease susceptibility is associated with variations affecting the gene represented in this entry.
- Melanoma, cutaneous malignant 6 (CMM6) [MIM:613972]: A malignant neoplasm of melanocytes, arising de novo or from a pre-existing benign nevus, which occurs most often in the skin but also may involve other sites. {ECO:0000269 PubMed:11059748}. Note=Disease susceptibility is associated with variations affecting the gene represented in this entry.
Additional Disease Information for XRCC3
- Genetic Association Database
- (GAD)
- Human Genome Epidemiology Navigator
- (HuGE)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No data available for Genatlas for XRCC3 Gene
Publications for XRCC3 Gene
- Variants in DNA double-strand break repair genes and breast cancer susceptibility. (PMID: 12023982) Kuschel B … Dunning A (Human molecular genetics 2002) 3 4 22 44 58
- A meta-analysis on XRCC1 and XRCC3 polymorphisms and colorectal cancer risk. (PMID: 19915856) Jiang Z … Cai S (International journal of colorectal disease 2010) 3 22 44 58
- Bladder cancer and polymorphisms of DNA repair genes (XRCC1, XRCC3, XPD, XPG, APE1, hOGG1). (PMID: 19414392) Narter KF … Isbir T (Anticancer research 2009) 3 22 44 58
- XRCC1 and XRCC3 DNA repair gene polymorphisms in breast cancer women from the Lodz region of Poland. (PMID: 19886181) Sobczuk A … Smolarz B (Polish journal of pathology : official journal of the Polish Society of Pathologists 2009) 3 22 44 58
- Do DNA repair genes OGG1, XRCC3 and XRCC7 have an impact on susceptibility to bladder cancer in the North Indian population? (PMID: 19815090) Gangwar R … Mittal RD (Mutation research 2009) 3 22 44 58
Products for XRCC3 Gene
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- Custom Antibody ServicesOriGene Antibodies for XRCC3
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- Search Origene for MassSpec and Protein Over-expression Lysates for XRCC3
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- Origene shrna, sirna, and RNAi products in human, mouse, rat for XRCC3
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- OriGene qPCR primer pairs and template standards for XRCC3
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- OriGene CRISPR knockouts for XRCC3
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- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For XRCC3
- GenScript: Next-day shipping of latest version cDNA ORF clones for XRCC3 in any vector
- GenScript Custom Purified and Recombinant Proteins Services for XRCC3
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- GenScript: Design CRISPR guide RNA sequences for XRCC3
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for XRCC3
- Browse Sino Biological cDNA Clones
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- Sino Biological Transfection Reagent
- Sino Biological Anti-His Tag Antibody
- Novus Biologicals Antibodies for XRCC3
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- Cloud-Clone Corp. disease models service
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- Cloud-Clone Corp. primary cells service
- Cyagen custom Knockout/knockin (KOKI) mouse models for XRCC3
- VectorBuilder custom plasmid, inducible vectors for XRCC3
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for XRCC3
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- antibodies-online: Search results for 160 available XRCC3 Antibodies ranked by validation data
- Compare Top XRCC3 Antibodies
- antibodies-online: Search results for 1 available XRCC3 Elisa Kits ranked by validation data
- Compare Top XRCC3 Elisa Kits
- antibodies-online: Search results for 12 available XRCC3 Proteins ranked by validation data
- Compare Top XRCC3 Proteins
- GeneTex XRCC3 antibody for XRCC3
- Search GeneTex for Proteins for XRCC3
- ViGene Biosciences adenoviral particle packaged cDNA for XRCC3 gene
- ViGene Biosciences lentiviral particle packaged cDNA for XRCC3 gene
- ViGene Biosciences ready-to-package AAV shRNAs for XRCC3 gene
- Search ViGene Biosciences for XRCC3
- Santa Cruz Biotechnology (SCBT) Antibodies for XRCC3
- Search Santa Cruz Biotechnology (SCBT) for XRCC3 siRNA/shRNA
- Santa Cruz Biotechnology (SCBT) CRISPR for XRCC3
- genomics-online: cdna clones - Search results for 79 available XRCC3 gene related products
- Overview of 79 available XRCC3 gene related products
- orf clones - Search results for 79 available XRCC3 gene related products
- Overview of 79 available XRCC3 gene related products
- genomics-online: gRNA clones - Search results for 79 available XRCC3 gene related products
- Overview of 79 available XRCC3 gene related products
- genomics-online: primer clones - Search results for 79 available XRCC3 gene related products
- Overview of 79 available XRCC3 gene related products
- genomics-online: shRNA clones - Search results for 79 available XRCC3 gene related products
- Overview of 79 available XRCC3 gene related products
Sources for XRCC3 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
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- (14) ProtoNet
- (15) Blocks
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- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
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- (155) genomics-online
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- (158) Applied Biosystems