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Aliases for XIRP2-AS1 Gene

Subcategory (RNA class) for XIRP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for XIRP2-AS1 Gene

  • XIRP2 Antisense RNA 1 2 3 5
  • XIRP2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for XIRP2-AS1 Gene

Previous GeneCards Identifiers for XIRP2-AS1 Gene

  • GC02M167981

Summaries for XIRP2-AS1 Gene

GeneCards Summary for XIRP2-AS1 Gene

XIRP2-AS1 (XIRP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for XIRP2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for XIRP2-AS1 Gene

Genomics for XIRP2-AS1 Gene

GeneHancer (GH) Regulatory Elements for XIRP2-AS1 Gene

Promoters and enhancers for XIRP2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I167140 Enhancer 0.7 Ensembl ENCODE 566.6 -0.2 -184 1.9 JUND POLR2A JUN RCOR1 FOS XIRP2-AS1 XIRP2 B3GALT1
GH02I167134 Enhancer 0.7 Ensembl ENCODE 14.5 +5.5 5512 2.1 JUND PKNOX1 POLR2A FOS XIRP2-AS1 XIRP2 PIR51196
GH02I167189 Enhancer 0.4 ENCODE dbSUPER 15.5 -49.1 -49111 0.8 XIRP2-AS1 XIRP2 B3GALT1
GH02I167192 Enhancer 0.4 ENCODE dbSUPER 14.3 -52.1 -52111 0.2 XIRP2-AS1 XIRP2 B3GALT1
GH02I167209 Enhancer 0.4 dbSUPER 10.9 -69.2 -69220 2.1 CEBPB MNT CEBPG XIRP2-AS1 B3GALT1 XIRP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around XIRP2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for XIRP2-AS1 Gene

Genomic Locations for XIRP2-AS1 Gene
chr2:167,122,809-167,140,955
(GRCh38/hg38)
Size:
18,147 bases
Orientation:
Minus strand
chr2:167,980,414-167,997,465
(GRCh37/hg19)

Genomic View for XIRP2-AS1 Gene

Genes around XIRP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
XIRP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for XIRP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for XIRP2-AS1 Gene

Proteins for XIRP2-AS1 Gene

Post-translational modifications for XIRP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for XIRP2-AS1 Gene

Domains & Families for XIRP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for XIRP2-AS1 Gene

Function for XIRP2-AS1 Gene

Phenotypes From GWAS Catalog for XIRP2-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for XIRP2-AS1 Gene

Localization for XIRP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for XIRP2-AS1 Gene

Pathways & Interactions for XIRP2-AS1 Gene

SuperPathways for XIRP2-AS1 Gene

No Data Available

Interacting Proteins for XIRP2-AS1 Gene

Gene Ontology (GO) - Biological Process for XIRP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for XIRP2-AS1 Gene

Drugs & Compounds for XIRP2-AS1 Gene

No Compound Related Data Available

Transcripts for XIRP2-AS1 Gene

mRNA/cDNA for XIRP2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for XIRP2-AS1 Gene

No ASD Table

Relevant External Links for XIRP2-AS1 Gene

GeneLoc Exon Structure for
XIRP2-AS1
ECgene alternative splicing isoforms for
XIRP2-AS1

Expression for XIRP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for XIRP2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for XIRP2-AS1 Gene

This gene is overexpressed in Testis (x33.9) and Heart - Left Ventricle (x12.8).
genes like me logo Genes that share expression patterns with XIRP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for XIRP2-AS1 Gene

Orthologs for XIRP2-AS1 Gene

Evolution for XIRP2-AS1 Gene

ENSEMBL:
Gene Tree for XIRP2-AS1 (if available)
TreeFam:
Gene Tree for XIRP2-AS1 (if available)

No data available for Orthologs for XIRP2-AS1 Gene

Paralogs for XIRP2-AS1 Gene

No data available for Paralogs for XIRP2-AS1 Gene

Variants for XIRP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for XIRP2-AS1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs114147582 benign, not specified 167,135,972(-) G/A intron_variant
rs1000008529 -- 167,127,251(-) G/C intron_variant
rs1000370349 -- 167,138,434(-) T/C intron_variant
rs1000386262 -- 167,140,419(-) A/G intron_variant
rs1000484618 -- 167,138,779(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for XIRP2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2672990 CNV deletion 23128226
esv3593278 CNV loss 21293372

Additional Variant Information for XIRP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
XIRP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for XIRP2-AS1 Gene

Disorders for XIRP2-AS1 Gene

Additional Disease Information for XIRP2-AS1

No disorders were found for XIRP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for XIRP2-AS1 Gene

Publications for XIRP2-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for XIRP2-AS1 Gene

Sources for XIRP2-AS1 Gene

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