Aliases for WWTR1-IT1 Gene

Subcategory (RNA class) for WWTR1-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for WWTR1-IT1 Gene

  • WWTR1 Intronic Transcript 1 2 3 5
  • WWTR1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • WWTR1-IT1 2 168
  • NONHSAG036361 92
  • HSALNG0029751 167

External Ids for WWTR1-IT1 Gene

Previous GeneCards Identifiers for WWTR1-IT1 Gene

  • GC00U933875
  • GC03M149369

Summaries for WWTR1-IT1 Gene

GeneCards Summary for WWTR1-IT1 Gene

WWTR1-IT1 (WWTR1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for WWTR1-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for WWTR1-IT1 Gene

Genomics for WWTR1-IT1 Gene

GeneHancer (GH) Regulatory Elements for WWTR1-IT1 Gene

Promoters and enhancers for WWTR1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J149647 Enhancer 0.8 Ensembl ENCODE dbSUPER 500.7 +1.4 1384 2 ZNF316 MAFK POLR2A ZKSCAN1 IKZF1 FOS RBFOX2 STAT3 WWTR1-IT1 COMMD2 RNU6-1098P WWTR1 lnc-TM4SF4-3
GH03J149649 Enhancer 0.3 Ensembl dbSUPER 500.7 -0.1 -116 0.2 WWTR1-IT1 RNU6-1098P WWTR1 WWTR1-AS1
GH03J150406 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 27 -761.2 -761184 9.7 HNRNPK ZNF217 EP300 CTCF SIN3A NRF1 POLR2G USF1 NCOR1 GTF2E2 TSC22D2 lnc-SERP1-4 WWTR1-IT1 COMMD2 EIF2A WWTR1 NPM1P29 lnc-TSC22D2-3 HSALNG0029785
GH03J150598 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 18.3 -952.4 -952400 8.8 ZNF217 CTCF ZSCAN5C SIN3A NRF1 TCF12 POLR2G RBAK PHF8 FOS SELENOT SERP1 lnc-SERP1-1 EIF2A WWTR1-IT1 ERICH6 ERICH6-AS1 COMMD2 piR-43939-026 piR-55705-033
GH03J149365 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 21.3 +277.7 277662 14.3 EP300 TCF12 POLR2G NCOR1 PHF8 FOS CTCF POLR2A KDM6A TCF7 TM4SF1 WWTR1-IT1 HPS3 TM4SF18 TM4SF1-AS1 RPS25P5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around WWTR1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for WWTR1-IT1 Gene

Genomic Locations for WWTR1-IT1 Gene
chr3:149,648,997-149,650,185
(GRCh38/hg38)
Size:
1,189 bases
Orientation:
Minus strand
chr3:149,366,784-149,367,971
(GRCh37/hg19)
Size:
1,188 bases
Orientation:
Minus strand

Genomic View for WWTR1-IT1 Gene

Genes around WWTR1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WWTR1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WWTR1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for WWTR1-IT1 Gene

Proteins for WWTR1-IT1 Gene

Post-translational modifications for WWTR1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for WWTR1-IT1 Gene

Domains & Families for WWTR1-IT1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for WWTR1-IT1 Gene

Function for WWTR1-IT1 Gene

Phenotypes From GWAS Catalog for WWTR1-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WWTR1-IT1 Gene

Localization for WWTR1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for WWTR1-IT1 Gene

Pathways & Interactions for WWTR1-IT1 Gene

PathCards logo

SuperPathways for WWTR1-IT1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for WWTR1-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for WWTR1-IT1 Gene

Drugs & Compounds for WWTR1-IT1 Gene

No Compound Related Data Available

Transcripts for WWTR1-IT1 Gene

mRNA/cDNA for WWTR1-IT1 Gene

2 RNACentral transcripts :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
1 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for WWTR1-IT1 Gene

No ASD Table

Relevant External Links for WWTR1-IT1 Gene

GeneLoc Exon Structure for
WWTR1-IT1

Expression for WWTR1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for WWTR1-IT1 Gene

genes like me logo Genes that share expression patterns with WWTR1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WWTR1-IT1 Gene

Orthologs for WWTR1-IT1 Gene

Evolution for WWTR1-IT1 Gene

ENSEMBL:
Gene Tree for WWTR1-IT1 (if available)
TreeFam:
Gene Tree for WWTR1-IT1 (if available)

No data available for Orthologs for WWTR1-IT1 Gene

Paralogs for WWTR1-IT1 Gene

No data available for Paralogs for WWTR1-IT1 Gene

Variants for WWTR1-IT1 Gene

Additional Variant Information for WWTR1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WWTR1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for WWTR1-IT1 Gene

Disorders for WWTR1-IT1 Gene

No disorders were found for WWTR1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for WWTR1-IT1 Gene

Publications for WWTR1-IT1 Gene

No publications were found for WWTR1-IT1 Gene.

No data available for Mastermind for WWTR1-IT1 Gene

Products for WWTR1-IT1 Gene

Sources for WWTR1-IT1 Gene