Aliases for WWTR1-AS1 Gene

Subcategory (RNA class) for WWTR1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for WWTR1-AS1 Gene

  • WWTR1 Antisense RNA 1 2 3 5
  • WWTR1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • WWTR1-AS1 2 168
  • NONHSAG036362 92
  • HSALNG0029752 167

External Ids for WWTR1-AS1 Gene

Previous GeneCards Identifiers for WWTR1-AS1 Gene

  • GC03U901794
  • GC03P149375

Summaries for WWTR1-AS1 Gene

GeneCards Summary for WWTR1-AS1 Gene

WWTR1-AS1 (WWTR1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for WWTR1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for WWTR1-AS1 Gene

Genomics for WWTR1-AS1 Gene

GeneHancer (GH) Regulatory Elements for WWTR1-AS1 Gene

Promoters and enhancers for WWTR1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J149652 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 510 0.0 -29 7.8 ZSCAN5C POLR2G NCOR1 PHF8 TEAD4 ZFX CTCF ZIC2 POLR2A KDM6A WWTR1-AS1 WWTR1 COMMD2 WWTR1-IT1
GH03J149571 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.6 -72.3 -72340 26.4 ZSCAN5C TCF12 SP1 JUND FOS ZNF639 ZNF10 EP300 ZIC2 REST WWTR1 WWTR1-AS1 RNU6-1098P lnc-TM4SF4-3 WWTR1-IT1
GH03J149601 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.8 -43.1 -43123 27.8 ZBTB40 TCF12 SP1 NCOR1 JUND FOS EP300 ZIC2 KDM6A TCF7 WWTR1 WWTR1-AS1 UBQLN4P1 COMMD2 TM4SF18 TM4SF1 WWTR1-IT1 lnc-TM4SF4-3
GH03J149531 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.7 -119.1 -119065 11.7 TCF12 TEAD4 FOS CTCF SAP30 RFX1 HDAC2 RBM25 FOXA2 ZNF316 WWTR1 WWTR1-AS1 TM4SF1 TM4SF4 piR-41306-192 RF00026-744 RNU6-1098P
GH03J149551 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.7 -101.8 -101823 7.2 TCF12 JUND FOS MAFF POLR2A FOSL2 MAFK USF1 RCOR1 PRDM6 WWTR1 RNU6-1098P WWTR1-AS1 TM4SF1 lnc-TM4SF4-3 piR-41306-192
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around WWTR1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for WWTR1-AS1 Gene

Genomic Locations for WWTR1-AS1 Gene
chr3:149,656,824-149,661,837
(GRCh38/hg38)
Size:
5,014 bases
Orientation:
Plus strand
chr3:149,374,807-149,379,151
(GRCh37/hg19)
Size:
4,345 bases
Orientation:
Plus strand

Genomic View for WWTR1-AS1 Gene

Genes around WWTR1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WWTR1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WWTR1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WWTR1-AS1 Gene

Proteins for WWTR1-AS1 Gene

Post-translational modifications for WWTR1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for WWTR1-AS1 Gene

Domains & Families for WWTR1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for WWTR1-AS1 Gene

Function for WWTR1-AS1 Gene

Phenotypes From GWAS Catalog for WWTR1-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WWTR1-AS1 Gene

Localization for WWTR1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for WWTR1-AS1 Gene

Pathways & Interactions for WWTR1-AS1 Gene

PathCards logo

SuperPathways for WWTR1-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for WWTR1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for WWTR1-AS1 Gene

Drugs & Compounds for WWTR1-AS1 Gene

No Compound Related Data Available

Transcripts for WWTR1-AS1 Gene

mRNA/cDNA for WWTR1-AS1 Gene

10 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
1 LncBook transcripts :
5 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for WWTR1-AS1 Gene

No ASD Table

Relevant External Links for WWTR1-AS1 Gene

GeneLoc Exon Structure for
WWTR1-AS1

Expression for WWTR1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for WWTR1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for WWTR1-AS1

SOURCE GeneReport for Unigene cluster for WWTR1-AS1 Gene:

Hs.680428
genes like me logo Genes that share expression patterns with WWTR1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WWTR1-AS1 Gene

Orthologs for WWTR1-AS1 Gene

Evolution for WWTR1-AS1 Gene

ENSEMBL:
Gene Tree for WWTR1-AS1 (if available)
TreeFam:
Gene Tree for WWTR1-AS1 (if available)

No data available for Orthologs for WWTR1-AS1 Gene

Paralogs for WWTR1-AS1 Gene

No data available for Paralogs for WWTR1-AS1 Gene

Variants for WWTR1-AS1 Gene

Additional dbSNP identifiers (rs#s) for WWTR1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for WWTR1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3307369 CNV mobile element insertion 20981092
esv34142 CNV loss 18971310
esv3417310 CNV insertion 20981092
nsv829754 CNV gain 17160897

Additional Variant Information for WWTR1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WWTR1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for WWTR1-AS1 Gene

Disorders for WWTR1-AS1 Gene

Additional Disease Information for WWTR1-AS1

No disorders were found for WWTR1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WWTR1-AS1 Gene

Publications for WWTR1-AS1 Gene

  1. Overexpression of lncRNA WWTR1-AS1 associates with tumor aggressiveness and unfavorable survival in head-neck squamous cell carcinoma. (PMID: 31172583) Li J … Cheng J (Journal of cellular biochemistry 2019) 2 3 54
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for WWTR1-AS1 Gene

Sources for WWTR1-AS1 Gene