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Aliases for WHSC1L2P Gene

Aliases for WHSC1L2P Gene

  • Wolf-Hirschhorn Syndrome Candidate 1-Like 2, Pseudogene 2 3
  • Wolf-Hirschhorn Syndrome Candidate 1-Like 1 Pseudogene 2 3
  • AC055813.1 5
  • HsT36289 3
  • WHSC1L1P 3
  • NSD4P 3

External Ids for WHSC1L2P Gene

Previous HGNC Symbols for WHSC1L2P Gene

  • WHSC1L1P

Previous GeneCards Identifiers for WHSC1L2P Gene

  • GC17U990246
  • GC17M039152
  • GC17M041795

Summaries for WHSC1L2P Gene

GeneCards Summary for WHSC1L2P Gene

WHSC1L2P (Wolf-Hirschhorn Syndrome Candidate 1-Like 2, Pseudogene) is a Pseudogene.

Additional gene information for WHSC1L2P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WHSC1L2P Gene

Genomics for WHSC1L2P Gene

GeneHancer (GH) Regulatory Elements for WHSC1L2P Gene

Promoters and enhancers for WHSC1L2P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I043719 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE 550.8 -0.3 -286 2.6 HDGF SMAD1 ZFP64 SIN3A DMAP1 ZNF48 ETS1 ZNF207 ZNF143 JUNB WHSC1L2P TMEM106A SOST MEOX1 LOC105371786 DUSP3 DHX8 TMUB2 GC17P043726 PIR44007
GH17I043724 Enhancer 0.9 ENCODE 0.8 -3.5 -3549 0.8 ZSCAN4 INSM2 MZF1 FEZF1 RFX5 ZEB1 GLIS2 ZNF366 SMARCC2 RCOR1 GC17P043726 PIR44007 ASB16-AS1 SOST TMUB2 DHX8 UBTF MEOX1 ENSG00000267340 CFAP97D1
GH17I043713 Enhancer 1 Ensembl ENCODE 0.4 +6.4 6425 1.6 ZNF48 ZNF335 GLIS2 ZNF366 KLF13 EGR2 SP3 ZNF362 ZNF398 KAT8 SOST LOC105371786 WHSC1L2P
GH17I043677 Enhancer 1.1 Ensembl ENCODE 0.3 +42.4 42351 0.6 ARID4B SIN3A ZNF48 ETS1 SLC30A9 GLIS2 ZNF213 ELK1 ZNF143 ZHX2 LOC105371786 WHSC1L2P
GH17I043700 Enhancer 0.8 ENCODE 0.4 +19.2 19198 1.2 BACH1 EBF1 BMI1 GTF3C2 ZNF121 FOXK2 POLR2A ZNF143 ATF7 ZSCAN29 SOST MEOX1 WHSC1L2P LOC105371786
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around WHSC1L2P on UCSC Golden Path with GeneCards custom track

Genomic Locations for WHSC1L2P Gene

Genomic Locations for WHSC1L2P Gene
chr17:43,718,314-43,720,436
(GRCh38/hg38)
Size:
2,123 bases
Orientation:
Minus strand
chr17:41,795,682-41,797,804
(GRCh37/hg19)

Genomic View for WHSC1L2P Gene

Genes around WHSC1L2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WHSC1L2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WHSC1L2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WHSC1L2P Gene

Proteins for WHSC1L2P Gene

Post-translational modifications for WHSC1L2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for WHSC1L2P Gene

Domains & Families for WHSC1L2P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for WHSC1L2P Gene

Function for WHSC1L2P Gene

Phenotypes From GWAS Catalog for WHSC1L2P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WHSC1L2P Gene

Localization for WHSC1L2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for WHSC1L2P Gene

Pathways & Interactions for WHSC1L2P Gene

SuperPathways for WHSC1L2P Gene

No Data Available

Interacting Proteins for WHSC1L2P Gene

Gene Ontology (GO) - Biological Process for WHSC1L2P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for WHSC1L2P Gene

Drugs & Compounds for WHSC1L2P Gene

No Compound Related Data Available

Transcripts for WHSC1L2P Gene

mRNA/cDNA for WHSC1L2P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for WHSC1L2P Gene

No ASD Table

Relevant External Links for WHSC1L2P Gene

GeneLoc Exon Structure for
WHSC1L2P
ECgene alternative splicing isoforms for
WHSC1L2P

Expression for WHSC1L2P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for WHSC1L2P Gene

mRNA differential expression in normal tissues according to GTEx for WHSC1L2P Gene

This gene is overexpressed in Testis (x12.2).

NURSA nuclear receptor signaling pathways regulating expression of WHSC1L2P Gene:

WHSC1L2P
genes like me logo Genes that share expression patterns with WHSC1L2P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WHSC1L2P Gene

Orthologs for WHSC1L2P Gene

Evolution for WHSC1L2P Gene

ENSEMBL:
Gene Tree for WHSC1L2P (if available)
TreeFam:
Gene Tree for WHSC1L2P (if available)

No data available for Orthologs for WHSC1L2P Gene

Paralogs for WHSC1L2P Gene

No data available for Paralogs for WHSC1L2P Gene

Variants for WHSC1L2P Gene

Additional Variant Information for WHSC1L2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WHSC1L2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for WHSC1L2P Gene

Disorders for WHSC1L2P Gene

Additional Disease Information for WHSC1L2P

Genetic Association Database
(GAD)

No disorders were found for WHSC1L2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WHSC1L2P Gene

Publications for WHSC1L2P Gene

  1. WHSC1L1, on human chromosome 8p11.2, closely resembles WHSC1 and maps to a duplicated region shared with 4p16.3. (PMID: 11549311) Stec I … den Dunnen JT (Genomics 2001) 2 3 58
  2. New sequence variants associated with bone mineral density. (PMID: 19079262) Styrkarsdottir U … Stefansson K (Nature genetics 2009) 44 58

Products for WHSC1L2P Gene

Sources for WHSC1L2P Gene

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