WFDC21P Gene (Pseudogene)

WAP Four-Disulfide Core Domain 21, Pseudogene

GC17M060085
GIFtS:
14

Aliases for WFDC21P Gene

Aliases for WFDC21P Gene

  • WAP Four-Disulfide Core Domain 21, Pseudogene 2 3 5
  • Long Non-Coding RNA, Dendritic Cell Differentiation 2 3
  • Lnc-Dendritic Cell LncRNA 2 3
  • WDNM1-Like, Pseudogene 2
  • WDNM1-Like Pseudogene 3
  • Linc-DC 3
  • Lnc-DC 3
  • LNCDC 3

External Ids for WFDC21P Gene

Summaries for WFDC21P Gene

GeneCards Summary for WFDC21P Gene

WFDC21P (WAP Four-Disulfide Core Domain 21, Pseudogene) is a Pseudogene. Diseases associated with WFDC21P include Pre-Eclampsia and Coronary Heart Disease 1.

Additional gene information for WFDC21P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for WFDC21P Gene

Genomics for WFDC21P Gene

GeneHancer (GH) Regulatory Elements for WFDC21P Gene

Promoters and enhancers for WFDC21P Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around WFDC21P on UCSC Golden Path with GeneCards custom track

Genomic Locations for WFDC21P Gene

Genomic Locations for WFDC21P Gene
chr17:60,083,566-60,091,885
(GRCh38/hg38)
Size:
8,320 bases
Orientation:
Minus strand
chr17:58,160,927-58,169,246
(GRCh37/hg19)
Size:
8,320 bases
Orientation:
Minus strand

Genomic View for WFDC21P Gene

Genes around WFDC21P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WFDC21P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WFDC21P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for WFDC21P Gene

Proteins for WFDC21P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for WFDC21P Gene

No Post-translational modifications

No data available for DME Specific Peptides for WFDC21P Gene

Domains & Families for WFDC21P Gene

Gene Families for WFDC21P Gene

HGNC:
genes like me logo Genes that share domains with WFDC21P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for WFDC21P Gene

Function for WFDC21P Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for WFDC21P Gene

Phenotypes for WFDC21P Gene

GenomeRNAi human phenotypes for WFDC21P:
genes like me logo Genes that share phenotypes with WFDC21P: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WFDC21P Gene

Localization for WFDC21P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for WFDC21P Gene

Pathways & Interactions for WFDC21P Gene

PathCards logo

SuperPathways for WFDC21P Gene

No Data Available

Gene Ontology (GO) - Biological Process for WFDC21P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for WFDC21P Gene

Drugs & Compounds for WFDC21P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for WFDC21P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for WFDC21P Gene

(3) Additional mRNA sequences :
(9) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for WFDC21P Gene

No ASD Table

Relevant External Links for WFDC21P Gene

GeneLoc Exon Structure for
WFDC21P
ECgene alternative splicing isoforms for
WFDC21P

Expression for WFDC21P Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for WFDC21P Gene

mRNA expression in normal human tissues for WFDC21P Gene
mRNA expression by GTEx for WFDC21P Gene

NURSA nuclear receptor signaling pathways regulating expression of WFDC21P Gene:

WFDC21P
genes like me logo Genes that share expression patterns with WFDC21P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WFDC21P Gene

Orthologs for WFDC21P Gene

Evolution for WFDC21P Gene

ENSEMBL:
Gene Tree for WFDC21P (if available)
TreeFam:
Gene Tree for WFDC21P (if available)

No data available for Orthologs for WFDC21P Gene

Paralogs for WFDC21P Gene

No data available for Paralogs for WFDC21P Gene

Variants for WFDC21P Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for WFDC21P Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000767040 -- 60,088,079(-) C/G intron_variant
rs1001618989 -- 60,084,325(-) C/T intron_variant
rs1001913479 -- 60,085,745(-) G/A intron_variant
rs1001983802 -- 60,085,380(-) T/C intron_variant
rs1002357294 -- 60,086,657(-) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for WFDC21P Gene

Variant ID Type Subtype PubMed ID
esv3640918 CNV gain 21293372
nsv499622 OTHER inversion 21111241
nsv7295 OTHER inversion 18451855
nsv833504 CNV gain 17160897
nsv9579 CNV gain+loss 18304495

Additional Variant Information for WFDC21P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WFDC21P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for WFDC21P Gene

Disorders for WFDC21P Gene

MalaCards: The human disease database

(4) MalaCards diseases for WFDC21P Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
pre-eclampsia
  • toxemia of pregnancy
coronary heart disease 1
  • coronary heart disease, susceptibility to, 1
diabetes mellitus, noninsulin-dependent
  • niddm
melanoma
  • malignant melanoma
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for WFDC21P

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with WFDC21P: view

No data available for UniProtKB/Swiss-Prot and Genatlas for WFDC21P Gene

Publications for WFDC21P Gene

  1. Transcriptome profiling of esophageal squamous cell carcinoma reveals a long noncoding RNA acting as a tumor suppressor. (PMID: 26158411) Wei G … Chen R (Oncotarget 2015) 2 3 56
  2. The STAT3-binding long noncoding RNA lnc-DC controls human dendritic cell differentiation. (PMID: 24744378) Wang P … Cao X (Science (New York, N.Y.) 2014) 2 3 56
  3. LncRNAs, MALAT1 and lnc-DC as potential biomarkers for multiple sclerosis diagnosis. (PMID: 30514825) Shaker OG … Mansour DF (Bioscience reports 2019) 3 56
  4. Lnc-DC regulates cellular turnover and the HBV-induced immune response by TLR9/STAT3 signaling in dendritic cells. (PMID: 30202418) Zhuang L … Huang C (Cellular & molecular biology letters 2018) 3 56
  5. Upregulation of LncDQ is Associated with Poor Prognosis and Promotes Tumor Progression via Epigenetic Regulation of the EMT Pathway in HCC. (PMID: 29669339) Zeng B … Liu J (Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 2018) 3 56

ExternalLinks

View latest publications for WFDC21P gene in Mastermind

Products for WFDC21P Gene

Sources for WFDC21P Gene