Aliases for WEE2-AS1 Gene

Subcategory (RNA class) for WEE2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for WEE2-AS1 Gene

  • WEE2 Antisense RNA 1 2 3 5
  • WEE2-AS1 2 168
  • NONHSAG048977 92
  • HSALNG0061854 167

External Ids for WEE2-AS1 Gene

Additional External Ids for WEE2-AS1 Gene

Previous GeneCards Identifiers for WEE2-AS1 Gene

  • GC07M141412

Summaries for WEE2-AS1 Gene

GeneCards Summary for WEE2-AS1 Gene

WEE2-AS1 (WEE2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with WEE2-AS1 include Glioma Susceptibility 1 and Oocyte Maturation Defect 5.

Rfam classification for WEE2-AS1 Gene

Additional gene information for WEE2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for WEE2-AS1 Gene

Genomics for WEE2-AS1 Gene

GeneHancer (GH) Regulatory Elements for WEE2-AS1 Gene

Promoters and enhancers for WEE2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J141736 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 562.6 -0.3 -346 3.8 RXRA EP300 FOXK2 ZBTB40 ZNF217 CTCF SIN3A NRF1 TCF12 USF1 WEE2-AS1 SSBP1 NONHSAG048978.2 TAS2R6P TAS2R5 PRSS37 WEE2 TAS2R4 AGK TAS2R3
GH07J141864 Enhancer 0.9 FANTOM5 Ensembl ENCODE 45.4 -126.9 -126854 2 JUNB TCF7 HLF NFIC MYC FOS WEE2-AS1 CLEC5A TAS2R38 lnc-MGAM-2 OR9A4
GH07J141550 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 17.8 +186.7 186746 2.4 RXRA HNRNPK ZBTB40 ZNF217 EP300 ZSCAN5C NRF1 TCF12 POLR2G SP1 AGK ENSG00000261570 LOC105375538 TAS2R6P TAS2R5 BRAF WEE2-AS1 ENSG00000270157 WEE2 TAS2R4
GH07J141785 Enhancer 0.6 Ensembl 60.6 -47.7 -47654 1.2 CTCF RAD21 TRIM22 SMC3 FOXA2 RELA SPI1 FOXA1 ZNF654 FOXK2 TAS2R6P lnc-SSBP1-2 WEE2-AS1 TAS2R4 SSBP1
GH07J141712 Enhancer 0.8 Ensembl ENCODE 40.2 +24.0 24046 4.6 HNRNPK REST CREB1 EHMT2 BATF STAT1 JUNB ATF2 MAZ JUND WEE2-AS1 WEE2 RNU1-82P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around WEE2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for WEE2-AS1 Gene

Genomic Locations for WEE2-AS1 Gene
chr7:141,703,342-141,738,347
(GRCh38/hg38)
Size:
35,006 bases
Orientation:
Minus strand
chr7:141,404,138-141,438,146
(GRCh37/hg19)
Size:
34,009 bases
Orientation:
Minus strand

Genomic View for WEE2-AS1 Gene

Genes around WEE2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WEE2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WEE2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WEE2-AS1 Gene

Proteins for WEE2-AS1 Gene

Post-translational modifications for WEE2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for WEE2-AS1 Gene

Domains & Families for WEE2-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for WEE2-AS1 Gene

Function for WEE2-AS1 Gene

Phenotypes From GWAS Catalog for WEE2-AS1 Gene

Phenotypes for WEE2-AS1 Gene

genes like me logo Genes that share phenotypes with WEE2-AS1: view

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for WEE2-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WEE2-AS1 Gene

Localization for WEE2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for WEE2-AS1 Gene

Pathways & Interactions for WEE2-AS1 Gene

PathCards logo

SuperPathways for WEE2-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for WEE2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for WEE2-AS1 Gene

Drugs & Compounds for WEE2-AS1 Gene

No Compound Related Data Available

Transcripts for WEE2-AS1 Gene

mRNA/cDNA for WEE2-AS1 Gene

32 RNACentral transcripts :
2 REFSEQ mRNAs :
6 NCBI additional mRNA sequence :
25 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
10 NONCODE transcripts :
13 LncBook transcripts :
26 LNCipedia transcripts :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for WEE2-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for WEE2-AS1 Gene

No ASD Table

Relevant External Links for WEE2-AS1 Gene

GeneLoc Exon Structure for
WEE2-AS1

Expression for WEE2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for WEE2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for WEE2-AS1

genes like me logo Genes that share expression patterns with WEE2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WEE2-AS1 Gene

Orthologs for WEE2-AS1 Gene

Evolution for WEE2-AS1 Gene

ENSEMBL:
Gene Tree for WEE2-AS1 (if available)
TreeFam:
Gene Tree for WEE2-AS1 (if available)

No data available for Orthologs for WEE2-AS1 Gene

Paralogs for WEE2-AS1 Gene

No data available for Paralogs for WEE2-AS1 Gene

Variants for WEE2-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for WEE2-AS1 Gene

SNP ID Clinical significance and condition Chr 07 pos Variation AA Info Type
734002 Benign: not provided 141,714,379(-) T/C SYNONYMOUS_VARIANT
734043 Likely Benign: not provided 141,708,968(-) G/A SYNONYMOUS_VARIANT
771415 Benign: not provided 141,723,126(-) T/C INTRON_VARIANT
771416 Benign: not provided 141,729,571(-) T/G MISSENSE_VARIANT
rs1554415096 Pathogenic: OOCYTE MATURATION DEFECT 5 141,719,186(-) G/C MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for WEE2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for WEE2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1532249 CNV deletion 17803354
esv2735248 CNV deletion 23290073
esv34135 CNV loss 18971310
nsv5973 CNV insertion 18451855

Additional Variant Information for WEE2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WEE2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for WEE2-AS1 Gene

Disorders for WEE2-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for WEE2-AS1 Gene - From: LncRNADisease and GeneCards

Disorder Aliases PubMed IDs
glioma susceptibility 1
  • glm1
oocyte maturation defect 5
  • oomd5
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for WEE2-AS1

genes like me logo Genes that share disorders with WEE2-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for WEE2-AS1 Gene

Publications for WEE2-AS1 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for WEE2-AS1 Gene

Sources for WEE2-AS1 Gene