Aliases for WDR7-OT1 Gene

Data sources for WDR7-OT1 Gene:

Subcategory (RNA class) for WDR7-OT1 Gene

lncRNA

Aliases for WDR7-OT1 Gene

External Ids for WDR7-OT1 Gene

Previous HGNC Symbols for WDR7-OT1 Gene

  • WDR7-UA1
  • WDR7-UT1

Previous GeneCards Identifiers for WDR7-OT1 Gene

  • GC18P054698

Summaries for WDR7-OT1 Gene

GeneCards Summary for WDR7-OT1 Gene

WDR7-OT1 (WDR7 Overlapping Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for WDR7-OT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for WDR7-OT1 Gene

Genomics for WDR7-OT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for WDR7-OT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J057030 Enhancer 0.6 UCNEbase 0.7 +2.9 2926 0.2 RXRA RAD21 NR2F6 HNF4A NR2F2 WDR7-OT1 lnc-BOD1L2-1 BOD1L2 TXNL1
GH18J057002 Enhancer 0.9 Ensembl ENCODE 0.3 -23.7 -23730 3.4 FEZF1 FOXA2 FOSL1 PRDM6 JUND BATF ELF1 NFATC1 ZNF362 IKZF1 WDR7 WDR7-OT1 HSALNG0121739 BOD1L2 TXNL1
GH18J057031 Enhancer 0.4 Ensembl 0.7 +2.3 2270 0.2 CTCF RAD21 ZNF143 SMC3 WDR7-OT1 lnc-BOD1L2-1 BOD1L2 TXNL1
GH18J057017 Enhancer 0.7 ENCODE 0.4 -10.5 -10454 0.5 ZIC2 CBFB BHLHE40 BATF ELF1 IKZF1 BMI1 ATF2 JUNB ZNF217 WDR7-OT1 HSALNG0121739 BOD1L2 TXNL1 WDR7
GH18J056986 Enhancer 0.9 Ensembl ENCODE 0.3 -40.5 -40530 2.2 CEBPA HOMEZ CEBPB FOXA2 TAL1 RXRA ZBTB33 JUND FOXP1 SOX5 WDR7 HSALNG0121739 WDR7-OT1 BOD1L2 TXNL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around WDR7-OT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for WDR7-OT1 Gene

Latest Assembly
chr18:57,027,831-57,049,295
(GRCh38/hg38)
Size:
21,465 bases
Orientation:
Plus strand

Previous Assembly
chr18:54,695,063-54,706,076
(GRCh37/hg19 by Ensembl)
Size:
11,014 bases
Orientation:
Plus strand

Genomic View for WDR7-OT1 Gene

Genes around WDR7-OT1 on UCSC Golden Path with GeneCards custom track
WDR7-OT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
WDR7-OT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WDR7-OT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WDR7-OT1 Gene

Proteins for WDR7-OT1 Gene

Post-translational modifications for WDR7-OT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for WDR7-OT1 Gene

Domains & Families for WDR7-OT1 Gene

Gene Families for WDR7-OT1 Gene

genes like me logo Genes that share domains with WDR7-OT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for WDR7-OT1 Gene

Function for WDR7-OT1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WDR7-OT1 Gene

Localization for WDR7-OT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for WDR7-OT1 Gene

Pathways & Interactions for WDR7-OT1 Gene

PathCards logo

SuperPathways for WDR7-OT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for WDR7-OT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for WDR7-OT1 Gene

Drugs & Compounds for WDR7-OT1 Gene

No Compound Related Data Available

Transcripts for WDR7-OT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for WDR7-OT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000449B6_9606 lncRNA 568 4

Ensembl: ENST00000592032 (view in UCSC) ,

LncBook: HSALNT0251683,

LNCipedia: WDR7-OT1:1,

NONCODE: NONHSAT059430.2,

URS00008BAB99_9606 lncRNA 875 3

LncBook: HSALNT0251686,

LNCipedia: WDR7-OT1:3,

NONCODE: NONHSAT059433.2,

URS00008B7624_9606 lncRNA 432 2

LNCipedia: WDR7-OT1:2,

NONCODE: NONHSAT059431.2,

URS0001BD5D7E_9606 lncRNA 875 1

LncBook: HSALNT0251686,

WDR7-OT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for WDR7-OT1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for WDR7-OT1 Gene

No ASD Table

Relevant External Links for WDR7-OT1 Gene

GeneLoc Exon Structure for
WDR7-OT1

Expression for WDR7-OT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for WDR7-OT1 Gene

genes like me logo Genes that share expression patterns with WDR7-OT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WDR7-OT1 Gene

Orthologs for WDR7-OT1 Gene

Evolution for WDR7-OT1 Gene

ENSEMBL:
Gene Tree for WDR7-OT1 (if available)
TreeFam:
Gene Tree for WDR7-OT1 (if available)

No data available for Orthologs for WDR7-OT1 Gene

Paralogs for WDR7-OT1 Gene

No data available for Paralogs for WDR7-OT1 Gene

Variants for WDR7-OT1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for WDR7-OT1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for WDR7-OT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WDR7-OT1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for WDR7-OT1 Gene

Disorders for WDR7-OT1 Gene

No disorders were found for WDR7-OT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for WDR7-OT1 Gene

Publications for WDR7-OT1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for WDR7-OT1 Gene

Products for WDR7-OT1 Gene

Sources for WDR7-OT1 Gene