WDR7-OT1 Gene (RNA Gene)

WDR7 Overlapping Transcript 1

GC18P057028
GIFtS:
9

Aliases for WDR7-OT1 Gene

Subcategory (RNA class) for WDR7-OT1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for WDR7-OT1 Gene

  • WDR7 Overlapping Transcript 1 2 3 5
  • WDR7 Overlapping Transcript 1 (Non-Protein Coding) 2 3
  • WDR7 3'UTR-Associated RNA 1 2 3
  • WDR7-OT1 2 170
  • NONHSAG023927 94
  • HSALNG0121740 169
  • WDR7-UA1 3
  • WDR7-UT1 3

External Ids for WDR7-OT1 Gene

Previous HGNC Symbols for WDR7-OT1 Gene

  • WDR7-UA1
  • WDR7-UT1

Previous GeneCards Identifiers for WDR7-OT1 Gene

  • GC18P054698

Summaries for WDR7-OT1 Gene

GeneCards Summary for WDR7-OT1 Gene

WDR7-OT1 (WDR7 Overlapping Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for WDR7-OT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for WDR7-OT1 Gene

Genomics for WDR7-OT1 Gene

GeneHancer (GH) Regulatory Elements for WDR7-OT1 Gene

Promoters and enhancers for WDR7-OT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J057030 Enhancer 0.6 UCNEbase 0.6 +2.9 2925 0.2 NR2F6 RXRA NR2F2 RAD21 HNF4A WDR7-OT1 lnc-BOD1L2-1 WDR7
GH18J057002 Enhancer 0.9 Ensembl ENCODE 0.3 -23.6 -23631 3.6 ZNF362 ZNF133 ETV6 SP7 ZNF687 PRDM1 CREM ZBED1 IKZF1 PKNOX1 WDR7 WDR7-OT1 ENSG00000212539
GH18J057017 Enhancer 0.7 ENCODE 0.4 -10.5 -10455 0.5 ETV6 MLLT1 CREM RELA IKZF1 ZIC2 IKZF2 ZSCAN4 PKNOX1 CBFB WDR7-OT1 ENSG00000212539 WDR7
GH18J056986 Enhancer 0.9 Ensembl ENCODE 0.3 -40.5 -40531 2.2 NR2F1 NR2F6 HLF POU5F1 TEAD4 SP1 CBFA2T2 CEBPG SP7 CEBPA WDR7 ENSG00000212539 WDR7-OT1
GH18J057025 Enhancer 0.3 Ensembl 0.6 -2.0 -2031 0.4 PKNOX1 POLR2A WDR7-OT1 ENSG00000212539 WDR7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around WDR7-OT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for WDR7-OT1 Gene

Genomic Locations for WDR7-OT1 Gene
chr18:57,027,832-57,044,194
(GRCh38/hg38)
Size:
16,363 bases
Orientation:
Plus strand
chr18:54,695,063-54,706,076
(GRCh37/hg19)
Size:
11,014 bases
Orientation:
Plus strand

Genomic View for WDR7-OT1 Gene

Genes around WDR7-OT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WDR7-OT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WDR7-OT1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for WDR7-OT1 Gene

Proteins for WDR7-OT1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for WDR7-OT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for WDR7-OT1 Gene

Domains & Families for WDR7-OT1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for WDR7-OT1 Gene

Function for WDR7-OT1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for WDR7-OT1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WDR7-OT1 Gene

Localization for WDR7-OT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for WDR7-OT1 Gene

Pathways & Interactions for WDR7-OT1 Gene

PathCards logo

SuperPathways for WDR7-OT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for WDR7-OT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for WDR7-OT1 Gene

Drugs & Compounds for WDR7-OT1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for WDR7-OT1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for WDR7-OT1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) NONCODE transcripts :
(3) RNACentral transcripts :
(2) LncBook transcripts :
(3) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for WDR7-OT1 Gene

No ASD Table

Relevant External Links for WDR7-OT1 Gene

GeneLoc Exon Structure for
WDR7-OT1
ECgene alternative splicing isoforms for
WDR7-OT1

Expression for WDR7-OT1 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for WDR7-OT1 Gene

mRNA expression in normal human tissues for WDR7-OT1 Gene
mRNA expression by GTEx for WDR7-OT1 Gene
genes like me logo Genes that share expression patterns with WDR7-OT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WDR7-OT1 Gene

Orthologs for WDR7-OT1 Gene

Evolution for WDR7-OT1 Gene

ENSEMBL:
Gene Tree for WDR7-OT1 (if available)
TreeFam:
Gene Tree for WDR7-OT1 (if available)

No data available for Orthologs for WDR7-OT1 Gene

Paralogs for WDR7-OT1 Gene

No data available for Paralogs for WDR7-OT1 Gene

Variants for WDR7-OT1 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for WDR7-OT1 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000159917 -- 57,035,386(+) C/T non_coding_transcript_variant
rs1000275012 -- 57,043,668(+) C/G intron_variant
rs1000465515 -- 57,037,928(+) C/T intron_variant
rs1000641888 -- 57,042,169(+) G/A intron_variant
rs1000732333 -- 57,037,696(+) C/A/T intron_variant

Additional Variant Information for WDR7-OT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WDR7-OT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for WDR7-OT1 Gene

Disorders for WDR7-OT1 Gene

No disorders were found for WDR7-OT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for WDR7-OT1 Gene

Publications for WDR7-OT1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56

No data available for External Links for WDR7-OT1 Gene

Products for WDR7-OT1 Gene

Sources for WDR7-OT1 Gene