WDR7-OT1 Gene (RNA Gene)

WDR7 Overlapping Transcript 1

GC18P057028
GIFtS:
9
See more...

Aliases for WDR7-OT1 Gene

Subcategory (RNA class) for WDR7-OT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for WDR7-OT1 Gene

  • WDR7 Overlapping Transcript 1 2 3 5
  • WDR7-OT1 2 5 165
  • WDR7 Overlapping Transcript 1 (Non-Protein Coding) 2 3
  • WDR7 3'UTR-Associated RNA 1 2 3
  • NONHSAG023927.2 91
  • HSALNG0121740 164
  • WDR7-UA1 3
  • WDR7-UT1 3

External Ids for WDR7-OT1 Gene

Previous HGNC Symbols for WDR7-OT1 Gene

  • WDR7-UA1
  • WDR7-UT1

Previous GeneCards Identifiers for WDR7-OT1 Gene

  • GC18P054698

Summaries for WDR7-OT1 Gene

GeneCards Summary for WDR7-OT1 Gene

WDR7-OT1 (WDR7 Overlapping Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for WDR7-OT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for WDR7-OT1 Gene

Genomics for WDR7-OT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for WDR7-OT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J057030 Enhancer 0.6 UCNEbase 0.7 +2.9 2925 0.2 NR2F2 RAD21 HNF4A RXRA NR2C2 NR2F6 WDR7-OT1 lnc-BOD1L2-1 BOD1L2 TXNL1 WDR7
GH18J057002 Enhancer 0.9 Ensembl ENCODE 0.4 -23.6 -23631 3.6 PRDM1 POLR2A IKZF2 PKNOX1 ARID3A DPF2 RELB RUNX3 ESR1 ZSCAN5C WDR7 WDR7-OT1 ENSG00000212539 BOD1L2 TXNL1
GH18J057017 Enhancer 0.7 ENCODE 0.4 -10.5 -10455 0.5 ZIC2 ZNF776 ZSCAN4 IKZF2 POLR2A RCOR1 PKNOX1 RELA EED ARID3A WDR7-OT1 ENSG00000212539 BOD1L2 TXNL1 WDR7
GH18J057025 Enhancer 0.4 Ensembl 0.7 -2.0 -2031 0.4 POLR2A RAD21 GATA2 PKNOX1 WDR7-OT1 ENSG00000212539 BOD1L2 TXNL1 WDR7
GH18J056986 Enhancer 0.9 Ensembl ENCODE 0.3 -40.5 -40531 2.2 GATAD2A TEAD4 SOX13 ZSCAN4 POLR2A RXRB SP1 CEBPA CEBPB FOXA2 WDR7 ENSG00000212539 WDR7-OT1 BOD1L2 TXNL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around WDR7-OT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for WDR7-OT1 Gene

Genomic Locations for WDR7-OT1 Gene
chr18:57,027,832-57,049,295
(GRCh38/hg38)
Size:
21,464 bases
Orientation:
Plus strand
chr18:54,695,063-54,706,076
(GRCh37/hg19)
Size:
11,014 bases
Orientation:
Plus strand

Genomic View for WDR7-OT1 Gene

Genes around WDR7-OT1 on UCSC Golden Path with GeneCards custom track
WDR7-OT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
WDR7-OT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WDR7-OT1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for WDR7-OT1 Gene

Proteins for WDR7-OT1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for WDR7-OT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for WDR7-OT1 Gene

Domains & Families for WDR7-OT1 Gene

Gene Families for WDR7-OT1 Gene

HGNC:
genes like me logo Genes that share domains with WDR7-OT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for WDR7-OT1 Gene

Function for WDR7-OT1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for WDR7-OT1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WDR7-OT1 Gene

Localization for WDR7-OT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for WDR7-OT1 Gene

Pathways & Interactions for WDR7-OT1 Gene

PathCards logo

SuperPathways for WDR7-OT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for WDR7-OT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for WDR7-OT1 Gene

Drugs & Compounds for WDR7-OT1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for WDR7-OT1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for WDR7-OT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000449B6_9606 lncRNA 565 5

HGNC: 45131,

Ensembl: ENST00000592032 (view in UCSC) ,

LncBook: HSALNT0251683,

LNCipedia: WDR7-OT1:1,

NONCODE: NONHSAT059430.2,

URS00008BAB99_9606 lncRNA 875 3

LncBook: HSALNT0251686,

LNCipedia: WDR7-OT1:3,

NONCODE: NONHSAT059433.2,

URS00008B7624_9606 lncRNA 429 2

LNCipedia: WDR7-OT1:2,

NONCODE: NONHSAT059431.2,

WDR7-OT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for WDR7-OT1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for WDR7-OT1 Gene

No ASD Table

Relevant External Links for WDR7-OT1 Gene

GeneLoc Exon Structure for
WDR7-OT1

Expression for WDR7-OT1 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for WDR7-OT1 Gene

mRNA expression in normal human tissues for WDR7-OT1 Gene
mRNA expression by GTEx for WDR7-OT1 Gene
genes like me logo Genes that share expression patterns with WDR7-OT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WDR7-OT1 Gene

Orthologs for WDR7-OT1 Gene

Evolution for WDR7-OT1 Gene

ENSEMBL:
Gene Tree for WDR7-OT1 (if available)
TreeFam:
Gene Tree for WDR7-OT1 (if available)

No data available for Orthologs for WDR7-OT1 Gene

Paralogs for WDR7-OT1 Gene

No data available for Paralogs for WDR7-OT1 Gene

Variants for WDR7-OT1 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for WDR7-OT1 Gene

Additional Variant Information for WDR7-OT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WDR7-OT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for WDR7-OT1 Gene

Disorders for WDR7-OT1 Gene

No disorders were found for WDR7-OT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for WDR7-OT1 Gene

Publications for WDR7-OT1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for WDR7-OT1 Gene

Products for WDR7-OT1 Gene

Sources for WDR7-OT1 Gene