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Aliases for WDR11-AS1 Gene

Subcategory (RNA class) for WDR11-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for WDR11-AS1 Gene

  • WDR11 Antisense RNA 1 2 3 5
  • WDR11 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for WDR11-AS1 Gene

Previous GeneCards Identifiers for WDR11-AS1 Gene

  • GC10M122524

Summaries for WDR11-AS1 Gene

GeneCards Summary for WDR11-AS1 Gene

WDR11-AS1 (WDR11 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for WDR11-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WDR11-AS1 Gene

Genomics for WDR11-AS1 Gene

GeneHancer (GH) Regulatory Elements for WDR11-AS1 Gene

Promoters and enhancers for WDR11-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I120850 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 -0.4 -422 2.5 ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 ZC3H11A ZFP41 WDR11 WDR11-AS1 SEC23IP MCMBP ENSG00000271670
GH10I120942 Enhancer 1 Ensembl ENCODE 5.9 -91.7 -91706 0.7 ELF3 CTCF PKNOX1 FOXA2 RB1 MAX SIN3A ZNF2 ZNF48 RAD21 ENSG00000224250 WDR11-AS1 WDR11 GC10P120938 LOC105378518 LOC105378519
GH10I120977 Enhancer 1.1 Ensembl ENCODE 4.6 -127.9 -127918 3.2 PKNOX1 ARNT FEZF1 ZNF2 GLIS2 KLF7 FOS SP3 TSHZ1 ZNF488 LOC105378519 WDR11 WDR11-AS1 LOC105378518
GH10I120981 Enhancer 0.6 ENCODE 4.6 -130.5 -130468 0.2 ZNF10 KLF17 ZIC2 ZNF843 OSR2 HIC1 ZBTB48 GLIS1 ZNF580 ZXDB LOC105378519 WDR11-AS1 LOC105378520
GH10I120812 Enhancer 0.2 ENCODE 5.1 +38.0 37955 0.9 LOC105378516 WDR11 WDR11-AS1 LINC01561
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around WDR11-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for WDR11-AS1 Gene

Genomic Locations for WDR11-AS1 Gene
chr10:120,761,812-120,851,345
(GRCh38/hg38)
Size:
89,534 bases
Orientation:
Minus strand
chr10:122,521,324-122,610,721
(GRCh37/hg19)

Genomic View for WDR11-AS1 Gene

Genes around WDR11-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WDR11-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WDR11-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WDR11-AS1 Gene

Proteins for WDR11-AS1 Gene

Post-translational modifications for WDR11-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for WDR11-AS1 Gene

Domains & Families for WDR11-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for WDR11-AS1 Gene

Function for WDR11-AS1 Gene

Phenotypes From GWAS Catalog for WDR11-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WDR11-AS1 Gene

Localization for WDR11-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for WDR11-AS1 Gene

Pathways & Interactions for WDR11-AS1 Gene

SuperPathways for WDR11-AS1 Gene

No Data Available

Interacting Proteins for WDR11-AS1 Gene

Gene Ontology (GO) - Biological Process for WDR11-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for WDR11-AS1 Gene

Drugs & Compounds for WDR11-AS1 Gene

No Compound Related Data Available

Transcripts for WDR11-AS1 Gene

mRNA/cDNA for WDR11-AS1 Gene

(3) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for WDR11-AS1 Gene

WDR11 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for WDR11-AS1 Gene

No ASD Table

Relevant External Links for WDR11-AS1 Gene

GeneLoc Exon Structure for
WDR11-AS1
ECgene alternative splicing isoforms for
WDR11-AS1

Expression for WDR11-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for WDR11-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for WDR11-AS1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x4.9), Brain - Putamen (basal ganglia) (x4.1), and Brain - Nucleus accumbens (basal ganglia) (x4.1).

SOURCE GeneReport for Unigene cluster for WDR11-AS1 Gene:

Hs.568750
genes like me logo Genes that share expression patterns with WDR11-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WDR11-AS1 Gene

Orthologs for WDR11-AS1 Gene

Evolution for WDR11-AS1 Gene

ENSEMBL:
Gene Tree for WDR11-AS1 (if available)
TreeFam:
Gene Tree for WDR11-AS1 (if available)

No data available for Orthologs for WDR11-AS1 Gene

Paralogs for WDR11-AS1 Gene

No data available for Paralogs for WDR11-AS1 Gene

Variants for WDR11-AS1 Gene

Sequence variations from dbSNP and Humsavar for WDR11-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000031724 -- 120,798,963(-) T/C intron_variant
rs1000071526 -- 120,779,178(-) A/G intron_variant
rs1000083164 -- 120,799,319(-) AAAAAAA/AAAAAAAA intron_variant
rs1000098206 -- 120,791,417(-) T/C intron_variant
rs1000183058 -- 120,827,450(-) C/G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for WDR11-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv525609 CNV loss 19592680
nsv522409 CNV loss 19592680
nsv1137964 CNV deletion 24896259
esv3624740 CNV loss 21293372
esv3624738 CNV gain 21293372
esv3624737 CNV gain 21293372
esv2675762 CNV deletion 23128226
esv25404 CNV loss 19812545
esv1556377 CNV deletion 17803354

Additional Variant Information for WDR11-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WDR11-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for WDR11-AS1 Gene

Disorders for WDR11-AS1 Gene

Additional Disease Information for WDR11-AS1

No disorders were found for WDR11-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WDR11-AS1 Gene

Publications for WDR11-AS1 Gene

  1. Genetic variation modifies risk for neurodegeneration based on biomarker status. (PMID: 25140149) Hohman TJ … Alzheimer's Neuroimaging Initiative (Frontiers in aging neuroscience 2014) 3 58
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for WDR11-AS1 Gene

Sources for WDR11-AS1 Gene

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