Aliases for WDFY3-AS2 Gene

Subcategory (RNA class) for WDFY3-AS2 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for WDFY3-AS2 Gene

  • WDFY3 Antisense RNA 2 2 3 5
  • WDFY3-AS2 2 5 165
  • WDFY3 Antisense RNA 2 (Non-Protein Coding) 2 3
  • FBI4 2 3
  • Chromosome 4 Open Reading Frame 12 2
  • Non-Protein Coding RNA 247 2
  • NONHSAG038359.2 91
  • HSALNG0035624 164
  • NCRNA00247 3
  • C4orf12 3

External Ids for WDFY3-AS2 Gene

Previous HGNC Symbols for WDFY3-AS2 Gene

  • C4orf12
  • NCRNA00247

Previous GeneCards Identifiers for WDFY3-AS2 Gene

  • GC04P085889
  • GC04P085894

Summaries for WDFY3-AS2 Gene

GeneCards Summary for WDFY3-AS2 Gene

WDFY3-AS2 (WDFY3 Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for WDFY3-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for WDFY3-AS2 Gene

Genomics for WDFY3-AS2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for WDFY3-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J084965 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 610.6 +0.6 567 3.8 GATAD2A PRDM10 ZNF629 SOX13 IKZF1 NFKBIZ ETV6 PRDM1 PHF21A ZIC2 WDFY3-AS2 WDFY3 ARHGAP24 CDS1
GH04J085827 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11.6 +863.1 863075 2.8 ZNF692 FOXA1 GABPA ZNF776 ZSCAN4 PATZ1 ZNF501 ZNF600 ZNF148 SCRT2 ARHGAP24 MAPK10 WDFY3-AS2 piR-48222-254 piR-39904-015 PTPN13
GH04J084937 Enhancer 0.6 Ensembl ENCODE 24.6 -27.2 -27234 3.8 JUND BHLHE40 JUN SMARCA4 HNF4A POLR2A WDFY3-AS2 WDFY3 WDFY3-AS1 RF00026-802 RNU6-469P CDS1
GH04J084945 Enhancer 0.6 Ensembl ENCODE 23.6 -20.3 -20334 3.6 CEBPA CEBPB NR2F6 HLF WDFY3-AS2 WDFY3 RNU6-469P WDFY3-AS1 RF00026-802 CDS1
GH04J084581 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 5.6 -381.4 -381425 5.6 CREB1 TEAD4 PRDM10 ZNF629 ZNF512 KDM1A ZNF692 ZHX2 JUND FOXA1 CDS1 lnc-NKX6-1-5 NKX6-1 WDFY3-AS2 FJ601684-348 WDFY3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around WDFY3-AS2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for WDFY3-AS2 Gene

Genomic Locations for WDFY3-AS2 Gene
chr4:84,965,534-85,027,046
(GRCh38/hg38)
Size:
61,513 bases
Orientation:
Plus strand
chr4:85,887,538-85,932,430
(GRCh37/hg19)
Size:
44,893 bases
Orientation:
Plus strand

Genomic View for WDFY3-AS2 Gene

Genes around WDFY3-AS2 on UCSC Golden Path with GeneCards custom track
WDFY3-AS2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
WDFY3-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WDFY3-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WDFY3-AS2 Gene

Proteins for WDFY3-AS2 Gene

Post-translational modifications for WDFY3-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for WDFY3-AS2 Gene

Domains & Families for WDFY3-AS2 Gene

Gene Families for WDFY3-AS2 Gene

genes like me logo Genes that share domains with WDFY3-AS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for WDFY3-AS2 Gene

Function for WDFY3-AS2 Gene

Phenotypes From GWAS Catalog for WDFY3-AS2 Gene

Phenotypes for WDFY3-AS2 Gene

GenomeRNAi human phenotypes for WDFY3-AS2:
genes like me logo Genes that share phenotypes with WDFY3-AS2: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for WDFY3-AS2

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WDFY3-AS2 Gene

Localization for WDFY3-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for WDFY3-AS2 Gene

Pathways & Interactions for WDFY3-AS2 Gene

PathCards logo

SuperPathways for WDFY3-AS2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for WDFY3-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for WDFY3-AS2 Gene

Drugs & Compounds for WDFY3-AS2 Gene

No Compound Related Data Available

Transcripts for WDFY3-AS2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for WDFY3-AS2 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000CCE129_9606 lncRNA 3383 2

HGNC: 21603,

RefSeq: NR_015359,

URS0000E756A2_9606 lncRNA 6593 1

Ensembl: ENST00000451762 (view in UCSC) ,

URS0000CCE0D7_9606 lncRNA 3553 1

RefSeq: NR_152776,

URS0000E63CEF_9606 lncRNA 3497 1

Ensembl: ENST00000651995 (view in UCSC) ,

URS0000CCDFEF_9606 lncRNA 3478 1

RefSeq: NR_152781,

WDFY3-AS2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for WDFY3-AS2 Gene

1 REFSEQ mRNAs :
10 NCBI additional mRNA sequence :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for WDFY3-AS2

Alternative Splicing Database (ASD) splice patterns (SP) for WDFY3-AS2 Gene

No ASD Table

Relevant External Links for WDFY3-AS2 Gene

GeneLoc Exon Structure for
WDFY3-AS2

Expression for WDFY3-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for WDFY3-AS2 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for WDFY3-AS2

SOURCE GeneReport for Unigene cluster for WDFY3-AS2 Gene:

Hs.720920
genes like me logo Genes that share expression patterns with WDFY3-AS2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WDFY3-AS2 Gene

Orthologs for WDFY3-AS2 Gene

Evolution for WDFY3-AS2 Gene

ENSEMBL:
Gene Tree for WDFY3-AS2 (if available)
TreeFam:
Gene Tree for WDFY3-AS2 (if available)

No data available for Orthologs for WDFY3-AS2 Gene

Paralogs for WDFY3-AS2 Gene

No data available for Paralogs for WDFY3-AS2 Gene

Variants for WDFY3-AS2 Gene

Additional dbSNP identifiers (rs#s) for WDFY3-AS2 Gene

Structural Variations from Database of Genomic Variants (DGV) for WDFY3-AS2 Gene

Variant ID Type Subtype PubMed ID
nsv519588 CNV gain 19592680

Additional Variant Information for WDFY3-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WDFY3-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for WDFY3-AS2 Gene

Disorders for WDFY3-AS2 Gene

No disorders were found for WDFY3-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WDFY3-AS2 Gene

Publications for WDFY3-AS2 Gene

  1. Long noncoding RNA WDFY3-AS2 suppresses tumor progression by acting as a competing endogenous RNA of microRNA-18a in ovarian cancer. (PMID: 31347170) Li W … Tan W (Journal of cellular physiology 2020) 2 3
  2. Breakpoint analysis of the pericentric inversion distinguishing human chromosome 4 from the homologous chromosome in the chimpanzee (Pan troglodytes). (PMID: 15580561) Kehrer-Sawatzki H … Hameister H (Human mutation 2005) 2 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  5. NotI flanking sequences: a tool for gene discovery and verification of the human genome. (PMID: 12136098) Kutsenko AS … Zabarovsky ER (Nucleic acids research 2002) 3

Products for WDFY3-AS2 Gene

Sources for WDFY3-AS2 Gene