Aliases for WARS2-AS1 Gene

Subcategory (RNA class) for WARS2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for WARS2-AS1 Gene

  • WARS2 Antisense RNA 1 2 3 5
  • NONHSAG002576 92
  • HSALNG0006467 167
  • HSALNG0006466 167
  • Lnc-HAO2-2 168
  • WARS2-AS1 2

External Ids for WARS2-AS1 Gene

Summaries for WARS2-AS1 Gene

GeneCards Summary for WARS2-AS1 Gene

WARS2-AS1 (WARS2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with WARS2-AS1 include Neurodevelopmental Disorder, Mitochondrial, With Abnormal Movements And Lactic Acidosis, With Or Without Seizures.

Additional gene information for WARS2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for WARS2-AS1 Gene

Genomics for WARS2-AS1 Gene

GeneHancer (GH) Regulatory Elements for WARS2-AS1 Gene

Promoters and enhancers for WARS2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J119138 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 54 +10.9 10879 3.2 ZBTB40 ZNF217 EP300 CTCF SIN3A NRF1 MYC POLR2G GTF2E2 PHF8 WARS2 lnc-TBX15-5 WARS2-AS1
GH01J118485 Enhancer 1.3 VISTA Ensembl CraniofacialAtlas 26.2 -643.3 -643298 2 ZSCAN5C ZNF300 ZIC2 ZNF423 ZNF510 SAP30 ZNF662 ATF2 OSR2 WT1 WARS2-AS1 HSALNG0006442 HSALNG0006441
GH01J119711 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.2 +583.7 583651 4.1 POLR2G GTF2E2 PHF8 ZNF639 REST POLR2A ZBTB10 ZBTB26 TARDBP SAP30 PHGDH LOC105378937 ADAM30 WARS2-AS1 ZNF697 LOC105378936
GH01J119158 Enhancer 0.6 Ensembl ENCODE 46.1 +30.6 30619 3 GATA2 BHLHE40 FOXA1 WARS2-AS1 WARS2 ENSG00000226172 piR-34135
GH01J119765 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 14.3 +638.1 638108 4.5 EP300 NCOR1 KDM6A TCF7 FOXA1 ZNF662 SKI TEAD1 ZBTB26 TBX3 HMGCS2 HSD3BP5 WARS2-AS1 ADAM30 REG4 ZNF697 lnc-HMGCS2-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around WARS2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for WARS2-AS1 Gene

Genomic Locations for WARS2-AS1 Gene
chr1:119,129,699-119,275,973
(GRCh38/hg38)
Size:
146,275 bases
Orientation:
Plus strand
chr1:119,683,019-119,818,596
(GRCh37/hg19)
Size:
135,578 bases
Orientation:
Plus strand

Genomic View for WARS2-AS1 Gene

Genes around WARS2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WARS2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WARS2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WARS2-AS1 Gene

Proteins for WARS2-AS1 Gene

Post-translational modifications for WARS2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for WARS2-AS1 Gene

Domains & Families for WARS2-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for WARS2-AS1 Gene

Function for WARS2-AS1 Gene

Phenotypes From GWAS Catalog for WARS2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WARS2-AS1 Gene

Localization for WARS2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for WARS2-AS1 Gene

Pathways & Interactions for WARS2-AS1 Gene

PathCards logo

SuperPathways for WARS2-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for WARS2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for WARS2-AS1 Gene

Drugs & Compounds for WARS2-AS1 Gene

No Compound Related Data Available

Transcripts for WARS2-AS1 Gene

mRNA/cDNA for WARS2-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for WARS2-AS1 Gene

No ASD Table

Relevant External Links for WARS2-AS1 Gene

GeneLoc Exon Structure for
WARS2-AS1

Expression for WARS2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for WARS2-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WARS2-AS1 Gene

Orthologs for WARS2-AS1 Gene

Evolution for WARS2-AS1 Gene

ENSEMBL:
Gene Tree for WARS2-AS1 (if available)
TreeFam:
Gene Tree for WARS2-AS1 (if available)

No data available for Orthologs for WARS2-AS1 Gene

Paralogs for WARS2-AS1 Gene

No data available for Paralogs for WARS2-AS1 Gene

Variants for WARS2-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for WARS2-AS1 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
rs139548132 Conflicting Interpretations: NEURODEVELOPMENTAL DISORDER, MITOCHONDRIAL, WITH ABNORMAL MOVEMENTS AND LACTIC ACIDOSIS, WITH OR WITHOUT SEIZURES; not provided 119,140,608(+) A/C MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for WARS2-AS1 Gene

Additional Variant Information for WARS2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WARS2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for WARS2-AS1 Gene

Disorders for WARS2-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for WARS2-AS1 Gene - From: GeneCards

- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with WARS2-AS1: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for WARS2-AS1 Gene

Publications for WARS2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for WARS2-AS1 Gene

Products for WARS2-AS1 Gene

Sources for WARS2-AS1 Gene