Aliases for WARS2-AS1 Gene

Data sources for WARS2-AS1 Gene:

RNA type for WARS2-AS1 Gene

lncRNA

Aliases for WARS2-AS1 Gene

External Ids for WARS2-AS1 Gene

Summaries for WARS2-AS1 Gene

GeneCards Summary for WARS2-AS1 Gene

WARS2-AS1 (WARS2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with WARS2-AS1 include Neurodevelopmental Disorder, Mitochondrial, With Abnormal Movements And Lactic Acidosis, With Or Without Seizures.

Additional gene information for WARS2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for WARS2-AS1 Gene

Genomics for WARS2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for WARS2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J119138 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 304 +10.9 10880 3.2 BCLAF1 ZNF207 MYC IKZF1 ZNF600 JUND ZNF580 ZNF592 ATF2 POLR2A WARS2-AS1 WARS2 HSALNG0006467 lnc-TBX15-5 TBX15
GH01J118963 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 28.6 -166.0 -165965 1.3 MYC SSRP1 ZNF592 KLF9 CEBPA ATF3 NFIC YY1 MXD4 CEBPB WARS2-AS1 WARS2 TBX15 HSALNG0006456 SPAG17
GH01J118958 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 17.9 -169.2 -169194 3.8 SSRP1 CEBPA ATF3 YY1 HOMEZ KMT2B THAP11 FOXA2 KDM6A MAFF WARS2 WARS2-AS1 LOC105378933 TBX15 HSALNG0006456 SPAG17
GH01J119782 Enhancer 1.2 Ensembl ENCODE dbSUPER 20.2 +656.0 655968 6.9 CEBPA YY1 CEBPB ZNF341 ZNF521 CTBP1 FOXA2 RXRA SMAD4 CUX1 HSALNG0006515 WARS2-AS1 PHGDH REG4 HMGCS2 ADAM30 WARS2
GH01J119327 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 13.6 +197.6 197644 1.6 ZNF580 ATF2 ZNF10 ZIC2 ZBTB10 CHD2 FEZF1 ZNF341 ZFP64 KLF7 HSALNG0006468-002 HSALNG0006468-003 HSALNG0006483 LINC01780 WARS2-AS1 HAO2 HAO2-IT1 ENSG00000227712 HSALNG0006482 WARS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around WARS2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for WARS2-AS1 Gene

Latest Assembly
chr1:119,129,698-119,278,655
(GRCh38/hg38)
Size:
148,958 bases
Orientation:
Plus strand

Previous Assembly
chr1:119,683,019-119,818,596
(GRCh37/hg19 by Entrez Gene)
Size:
135,578 bases
Orientation:
Plus strand

chr1:119,683,019-119,818,596
(GRCh37/hg19 by Ensembl)
Size:
135,578 bases
Orientation:
Plus strand

Genomic View for WARS2-AS1 Gene

Genes around WARS2-AS1 on UCSC Golden Path with GeneCards custom track
WARS2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
WARS2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WARS2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WARS2-AS1 Gene

Proteins for WARS2-AS1 Gene

Post-translational modifications for WARS2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for WARS2-AS1 Gene

Domains & Families for WARS2-AS1 Gene

Gene Families for WARS2-AS1 Gene

genes like me logo Genes that share domains with WARS2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for WARS2-AS1 Gene

Function for WARS2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WARS2-AS1 Gene

Localization for WARS2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for WARS2-AS1 Gene

Pathways & Interactions for WARS2-AS1 Gene

PathCards logo

SuperPathways for WARS2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for WARS2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for WARS2-AS1 Gene

Drugs & Compounds for WARS2-AS1 Gene

No Compound Related Data Available

Transcripts for WARS2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for WARS2-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000044B6EC_9606 lncRNA 542 4

Ensembl: ENST00000457043 (view in UCSC) ,

LncBook: HSALNT0013537,

LNCipedia: lnc-HAO2-2:3,

NONCODE: NONHSAT005532.2,

URS0000160A1B_9606 lncRNA 1159 3

Ensembl: ENST00000413531 (view in UCSC) ,

LNCipedia: lnc-HAO2-2:4,

NONCODE: NONHSAT005534.2,

URS000044ECF0_9606 lncRNA 2469 2

Ensembl: ENST00000440150 (view in UCSC) ,

NONCODE: NONHSAT005529.2,

URS0000001D78_9606 lncRNA 1529 2

Ensembl: ENST00000418015 (view in UCSC) ,

LNCipedia: lnc-HAO2-2:5,

URS00005C0A89_9606 lncRNA 745 2

Ensembl: ENST00000425884 (view in UCSC) ,

NONCODE: NONHSAT005528.2,

WARS2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for WARS2-AS1 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for WARS2-AS1 Gene

No ASD Table

Relevant External Links for WARS2-AS1 Gene

GeneLoc Exon Structure for
WARS2-AS1

Expression for WARS2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for WARS2-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WARS2-AS1 Gene

Orthologs for WARS2-AS1 Gene

Evolution for WARS2-AS1 Gene

ENSEMBL:
Gene Tree for WARS2-AS1 (if available)
TreeFam:
Gene Tree for WARS2-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for WARS2-AS1

No data available for Orthologs for WARS2-AS1 Gene

Paralogs for WARS2-AS1 Gene

No data available for Paralogs for WARS2-AS1 Gene

Variants for WARS2-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for WARS2-AS1 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
rs139548132 Conflicting Interpretations: Neurodevelopmental disorder, mitochondrial, with abnormal movements and lactic acidosis, with or without seizures; not provided 119,140,608(+) A/C
NM_015836.3(WARS2):c.37T>G (p.Trp13Gly)
MISSENSE_VARIANT,NON_CODING_TRANSCRIPT

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for WARS2-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for WARS2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WARS2-AS1
Leiden Open Variation Database (LOVD)
WARS2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for WARS2-AS1 Gene

Disorders for WARS2-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for WARS2-AS1 Gene - From: GCD

- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for WARS2-AS1

Open Targets Platform
Open Targets Platform
genes like me logo Genes that share disorders with WARS2-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for WARS2-AS1 Gene

Publications for WARS2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for WARS2-AS1 Gene

Products for WARS2-AS1 Gene

Sources for WARS2-AS1 Gene