Aliases for WAKMAR2 Gene

Subcategory (RNA class) for WAKMAR2 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for WAKMAR2 Gene

  • Wound And Keratinocyte Migration Associated LncRNA 2 2 3 5
  • Lnc-TNFAIP3 2 3
  • WAKMAR2 2 5
  • NONHSAG044956.2 91
  • HSALNG0053792 164
  • HSALNG0053791 164
  • Lnc-PERP-2 165

External Ids for WAKMAR2 Gene

Summaries for WAKMAR2 Gene

GeneCards Summary for WAKMAR2 Gene

WAKMAR2 (Wound And Keratinocyte Migration Associated LncRNA 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for WAKMAR2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for WAKMAR2 Gene

Genomics for WAKMAR2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for WAKMAR2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J137861 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +1.9 1904 14.1 SP1 HNRNPL CREB1 GATAD2A CTCF ATF7 TEAD4 PRDM10 ZNF629 REST TNFAIP3 WAKMAR2 LOC107986649 NONHSAG044958.2 PERP
GH06J137819 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 39.5 +47.2 47209 7.4 CREB1 PRDM10 ZNF629 RFX1 MTA2 RELA PKNOX1 POLR2A REST IKZF2 TNFAIP3 WAKMAR2 lnc-TNFAIP3-1 LOC107986649 OLIG3
GH06J137810 Enhancer 1.7 VISTA FANTOM5 ENCODE dbSUPER 17.2 +58.1 58139 3.7 SP1 CREB1 GATAD2A PRDM10 ZNF629 TFE3 ZNF512 LEF1 SOX13 IKZF1 lnc-PERP-11 lnc-TNFAIP3-12 TNFAIP3 WAKMAR2 lnc-TNFAIP3-1 OLIG3
GH06J137826 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 18.9 +40.2 40197 6.4 PRDM10 LEF1 IKZF1 POLR2A JUND MTA2 RELA PKNOX1 ZNF24 IKZF2 TNFAIP3 WAKMAR2 OLIG3 lnc-TNFAIP3-1 LOC107986649
GH06J137807 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 19.1 +61.6 61593 2.5 GATAD2A ZNF629 ZNF512 NFKBIZ RCOR2 MTA2 CEBPA SOX13 RBAK YBX1 TNFAIP3 WAKMAR2 lnc-PERP-11 lnc-TNFAIP3-12 piR-31199-321 OLIG3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around WAKMAR2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for WAKMAR2 Gene

Genomic Locations for WAKMAR2 Gene
chr6:137,820,625-137,870,327
(GRCh38/hg38)
Size:
49,703 bases
Orientation:
Minus strand
chr6:138,144,810-138,189,370
(GRCh37/hg19)
Size:
44,561 bases
Orientation:
Minus strand

Genomic View for WAKMAR2 Gene

Genes around WAKMAR2 on UCSC Golden Path with GeneCards custom track
WAKMAR2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
WAKMAR2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WAKMAR2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WAKMAR2 Gene

Proteins for WAKMAR2 Gene

Post-translational modifications for WAKMAR2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for WAKMAR2 Gene

Domains & Families for WAKMAR2 Gene

Gene Families for WAKMAR2 Gene

genes like me logo Genes that share domains with WAKMAR2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for WAKMAR2 Gene

Function for WAKMAR2 Gene

Phenotypes From GWAS Catalog for WAKMAR2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WAKMAR2 Gene

Localization for WAKMAR2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for WAKMAR2 Gene

Pathways & Interactions for WAKMAR2 Gene

PathCards logo

SuperPathways for WAKMAR2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for WAKMAR2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for WAKMAR2 Gene

Drugs & Compounds for WAKMAR2 Gene

No Compound Related Data Available

Transcripts for WAKMAR2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for WAKMAR2 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001FD89B_9606 lncRNA 946 4

Ensembl: ENST00000606327 (view in UCSC) ,

LncBook: HSALNT0113947,

LNCipedia: lnc-PERP-2:6,

NONCODE: NONHSAT209765.1,

URS00005B9967_9606 lncRNA 777 4

Ensembl: ENST00000431144 (view in UCSC) ,

LncBook: HSALNT0113954,

LNCipedia: lnc-PERP-2:2,

NONCODE: NONHSAT115188.2,

URS000075B835_9606 lncRNA 1965 3

HGNC: 53754,

RefSeq: NR_049793,

LNCipedia: lnc-PERP-2:36,

URS00001CD820_9606 lncRNA 1025 3

Ensembl: ENST00000440578 (view in UCSC) ,

LNCipedia: lnc-PERP-2:9,

NONCODE: NONHSAT115183.2,

URS0000574C21_9606 lncRNA 963 3

Ensembl: ENST00000448942 (view in UCSC) ,

LNCipedia: lnc-PERP-2:1,

NONCODE: NONHSAT115187.2,

WAKMAR2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for WAKMAR2 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for WAKMAR2 Gene

No ASD Table

Relevant External Links for WAKMAR2 Gene

GeneLoc Exon Structure for
WAKMAR2

Expression for WAKMAR2 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for WAKMAR2

SOURCE GeneReport for Unigene cluster for WAKMAR2 Gene:

Hs.598050
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WAKMAR2 Gene

Orthologs for WAKMAR2 Gene

Evolution for WAKMAR2 Gene

ENSEMBL:
Gene Tree for WAKMAR2 (if available)
TreeFam:
Gene Tree for WAKMAR2 (if available)

No data available for Orthologs for WAKMAR2 Gene

Paralogs for WAKMAR2 Gene

No data available for Paralogs for WAKMAR2 Gene

Variants for WAKMAR2 Gene

Additional dbSNP identifiers (rs#s) for WAKMAR2 Gene

Structural Variations from Database of Genomic Variants (DGV) for WAKMAR2 Gene

Variant ID Type Subtype PubMed ID
esv2662818 CNV deletion 23128226
esv3341646 CNV insertion 20981092
esv3571419 CNV loss 25503493
esv3610948 CNV gain 21293372
esv3610949 CNV loss 21293372
nsv470863 CNV loss 18288195
nsv474427 CNV novel sequence insertion 20440878
nsv5493 CNV insertion 18451855
nsv830818 CNV gain 17160897
nsv830819 CNV loss 17160897

Additional Variant Information for WAKMAR2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WAKMAR2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for WAKMAR2 Gene

Disorders for WAKMAR2 Gene

No disorders were found for WAKMAR2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WAKMAR2 Gene

Publications for WAKMAR2 Gene

  1. The long noncoding RNA ROCKI regulates inflammatory gene expression. (PMID: 30918008) Zhang Q … Rana TM (The EMBO journal 2019) 2 3
  2. WAKMAR2, a Long Noncoding RNA Downregulated in Human Chronic Wounds, Modulates Keratinocyte Motility and Production of Inflammatory Chemokines. (PMID: 30594489) Herter EK … Xu Landén N (The Journal of investigative dermatology 2019) 2 3
  3. Methylation-mediated downregulation of long noncoding RNA LOC100130476 in gastric cardia adenocarcinoma. (PMID: 27189370) Guo W … Wang G (Clinical & experimental metastasis 2016) 3
  4. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey SD … DREAM investigators (Diabetes care 2010) 3
  5. Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PMID: 19913121) Talmud PJ … BRIGHT Consortium (American journal of human genetics 2009) 3

No data available for Mastermind for WAKMAR2 Gene

Products for WAKMAR2 Gene

Sources for WAKMAR2 Gene