Aliases for WAC-AS1 Gene

Subcategory (RNA class) for WAC-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for WAC-AS1 Gene

  • WAC Antisense RNA 1 (Head To Head) 2 3 5
  • WAC-AS1 2 170
  • HSALNG0076906 169
  • NONHSAG005482 94
  • HSALNG0076905 169

External Ids for WAC-AS1 Gene

Previous GeneCards Identifiers for WAC-AS1 Gene

  • GC10M028808

Summaries for WAC-AS1 Gene

GeneCards Summary for WAC-AS1 Gene

WAC-AS1 (WAC Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for WAC-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for WAC-AS1 Gene

Genomics for WAC-AS1 Gene

GeneHancer (GH) Regulatory Elements for WAC-AS1 Gene

Promoters and enhancers for WAC-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J028531 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 795.7 +0.5 500 4.6 ZNF24 ZBTB40 SMARCE1 RBPJ POLR2A TCF7L2 HCFC1 MIXL1 ZNF362 MYC WAC-AS1 WAC BAMBI
GH10J028592 Enhancer 1.1 Ensembl ENCODE dbSUPER 51.4 -60.5 -60519 3.8 SMARCE1 ZNF362 TEAD4 BCL6B MAFK SP7 SMARCA4 ZNF384 FOSL2 DPF2 WAC-AS1 WAC NONHSAG005483.2 piR-37601
GH10J028587 Enhancer 0.9 Ensembl ENCODE dbSUPER 51 -53.7 -53700 4.2 CTCF HLF RAD21 SP7 PRDM1 CEBPG RXRA CEBPB IKZF1 JUND WAC-AS1 WAC NONHSAG005483.2 piR-37601
GH10J028539 Enhancer 1.1 Ensembl ENCODE dbSUPER 40.6 -16.2 -16200 23.2 ZNF362 SP7 PRDM1 IKZF1 CTBP1 ZSCAN4 PKNOX1 POLR2A ETV6 NFE2 WAC-AS1 WAC BAMBI RF00017-627
GH10J028675 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 19.3 -145.9 -145930 7.7 SP1 ZBTB40 CTCF RBPJ SMARCE1 POLR2A USF2 CTBP1 NR2F6 MIXL1 BAMBI WAC-AS1 ARMC4 RNU6-270P LYZL1 WAC piR-50444-041
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around WAC-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for WAC-AS1 Gene

Genomic Locations for WAC-AS1 Gene
chr10:28,507,054-28,533,601
(GRCh38/hg38)
Size:
26,548 bases
Orientation:
Minus strand
chr10:28,808,846-28,821,672
(GRCh37/hg19)
Size:
12,827 bases
Orientation:
Minus strand

Genomic View for WAC-AS1 Gene

Genes around WAC-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WAC-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WAC-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WAC-AS1 Gene

Proteins for WAC-AS1 Gene

Post-translational modifications for WAC-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for WAC-AS1 Gene

Domains & Families for WAC-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for WAC-AS1 Gene

Function for WAC-AS1 Gene

Phenotypes From GWAS Catalog for WAC-AS1 Gene

Phenotypes for WAC-AS1 Gene

genes like me logo Genes that share phenotypes with WAC-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WAC-AS1 Gene

Localization for WAC-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for WAC-AS1 Gene

Pathways & Interactions for WAC-AS1 Gene

PathCards logo

SuperPathways for WAC-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for WAC-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for WAC-AS1 Gene

Drugs & Compounds for WAC-AS1 Gene

No Compound Related Data Available

Transcripts for WAC-AS1 Gene

mRNA/cDNA for WAC-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for WAC-AS1 Gene

No ASD Table

Relevant External Links for WAC-AS1 Gene

GeneLoc Exon Structure for
WAC-AS1
ECgene alternative splicing isoforms for
WAC-AS1

Expression for WAC-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for WAC-AS1 Gene

SOURCE GeneReport for Unigene cluster for WAC-AS1 Gene:

Hs.403253
genes like me logo Genes that share expression patterns with WAC-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WAC-AS1 Gene

Orthologs for WAC-AS1 Gene

Evolution for WAC-AS1 Gene

ENSEMBL:
Gene Tree for WAC-AS1 (if available)
TreeFam:
Gene Tree for WAC-AS1 (if available)

No data available for Orthologs for WAC-AS1 Gene

Paralogs for WAC-AS1 Gene

No data available for Paralogs for WAC-AS1 Gene

Variants for WAC-AS1 Gene

Sequence variations from dbSNP and Humsavar for WAC-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000005472 -- 28,519,761(-) T/A/C downstream_transcript_variant
rs1000016990 -- 28,524,244(-) A/G/T non_coding_transcript_variant
rs1000093984 -- 28,519,773(-) /T downstream_transcript_variant
rs1000146258 -- 28,519,503(-) G/C downstream_transcript_variant
rs1000509689 -- 28,529,156(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for WAC-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2734606 CNV deletion 23290073
nsv947797 CNV duplication 23825009

Additional Variant Information for WAC-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WAC-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for WAC-AS1 Gene

Disorders for WAC-AS1 Gene

Additional Disease Information for WAC-AS1

No disorders were found for WAC-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WAC-AS1 Gene

Publications for WAC-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 56
  2. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3 56
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

Products for WAC-AS1 Gene

Sources for WAC-AS1 Gene