Aliases for WAC-AS1 Gene

Subcategory (RNA class) for WAC-AS1 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for WAC-AS1 Gene

  • WAC Antisense RNA 1 (Head To Head) 2 3 5
  • WAC-AS1 2 5 165
  • NONHSAG005482.2 91
  • HSALNG0076906 164
  • HSALNG0076905 164

External Ids for WAC-AS1 Gene

Previous GeneCards Identifiers for WAC-AS1 Gene

  • GC10M028808

Summaries for WAC-AS1 Gene

GeneCards Summary for WAC-AS1 Gene

WAC-AS1 (WAC Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for WAC-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for WAC-AS1 Gene

Genomics for WAC-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for WAC-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J028531 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 645.7 +0.5 500 4.6 HNRNPL CREB1 GATAD2A ZNF629 TFE3 LEF1 IKZF1 ZNF692 POLR2A ZNF7 WAC-AS1 WAC BAMBI
GH10J028592 Enhancer 1.1 Ensembl ENCODE dbSUPER 51.4 -60.5 -60519 3.8 ZNF629 JUND REST DPF2 HDAC1 ZNF600 FOXJ2 GATAD2B EP300 CEBPB WAC-AS1 WAC NONHSAG005483.2 MN309158 BAMBI
GH10J028587 Enhancer 1 Ensembl ENCODE dbSUPER 51 -53.7 -53700 4.2 CEBPG PRDM1 CTCF CEBPB RBM22 JUND NR2F2 IKZF1 RAD21 HNF4A WAC-AS1 WAC NONHSAG005483.2 MN309158 BAMBI
GH10J028539 Enhancer 1.1 Ensembl ENCODE dbSUPER 40.6 -16.2 -16200 23.2 TEAD4 IKZF1 POLR2A PRDM1 ZSCAN4 RBFOX2 ETV6 PKNOX1 RFX1 ZXDB WAC-AS1 WAC BAMBI SNODB2087
GH10J028675 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 19.3 -145.9 -145930 7.7 RNF2 ARHGAP35 SP1 HNRNPL ZNF629 PRDM10 LEF1 IKZF1 NFKBIZ KDM1A BAMBI WAC-AS1 RNU6-270P LYZL1 WAC piR-50444-041
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around WAC-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for WAC-AS1 Gene

Genomic Locations for WAC-AS1 Gene
chr10:28,507,054-28,533,601
(GRCh38/hg38)
Size:
26,548 bases
Orientation:
Minus strand
chr10:28,808,846-28,821,672
(GRCh37/hg19)
Size:
12,827 bases
Orientation:
Minus strand

Genomic View for WAC-AS1 Gene

Genes around WAC-AS1 on UCSC Golden Path with GeneCards custom track
WAC-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
WAC-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WAC-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WAC-AS1 Gene

Proteins for WAC-AS1 Gene

Post-translational modifications for WAC-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for WAC-AS1 Gene

Domains & Families for WAC-AS1 Gene

Gene Families for WAC-AS1 Gene

genes like me logo Genes that share domains with WAC-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for WAC-AS1 Gene

Function for WAC-AS1 Gene

Phenotypes From GWAS Catalog for WAC-AS1 Gene

genes like me logo Genes that share phenotypes with WAC-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WAC-AS1 Gene

Localization for WAC-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for WAC-AS1 Gene

Pathways & Interactions for WAC-AS1 Gene

PathCards logo

SuperPathways for WAC-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for WAC-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for WAC-AS1 Gene

Drugs & Compounds for WAC-AS1 Gene

No Compound Related Data Available

Transcripts for WAC-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for WAC-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001DA843_9606 lncRNA 2323 4

Ensembl: ENST00000527986 (view in UCSC) ,

LncBook: HSALNT0160396,

LNCipedia: WAC-AS1:3,

NONCODE: NONHSAT011932.2,

URS0000759FCD_9606 lncRNA 5376 3

HGNC: 27347,

RefSeq: NR_033805,

LNCipedia: WAC-AS1:6,

URS0000EF6284_9606 lncRNA 2649 1

Ensembl: ENST00000528337 (view in UCSC) ,

URS0000EEADC7_9606 lncRNA 2157 1

Ensembl: ENST00000664327 (view in UCSC) ,

URS00008B8D00_9606 lncRNA 1471 3

LncBook: HSALNT0160401,

LNCipedia: WAC-AS1:7,

NONCODE: NONHSAT011934.2,

WAC-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for WAC-AS1 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for WAC-AS1 Gene

No ASD Table

Relevant External Links for WAC-AS1 Gene

GeneLoc Exon Structure for
WAC-AS1

Expression for WAC-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for WAC-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for WAC-AS1

SOURCE GeneReport for Unigene cluster for WAC-AS1 Gene:

Hs.403253
genes like me logo Genes that share expression patterns with WAC-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WAC-AS1 Gene

Orthologs for WAC-AS1 Gene

Evolution for WAC-AS1 Gene

ENSEMBL:
Gene Tree for WAC-AS1 (if available)
TreeFam:
Gene Tree for WAC-AS1 (if available)

No data available for Orthologs for WAC-AS1 Gene

Paralogs for WAC-AS1 Gene

No data available for Paralogs for WAC-AS1 Gene

Variants for WAC-AS1 Gene

Additional dbSNP identifiers (rs#s) for WAC-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for WAC-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2734606 CNV deletion 23290073
nsv947797 CNV duplication 23825009

Additional Variant Information for WAC-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WAC-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for WAC-AS1 Gene

Disorders for WAC-AS1 Gene

Additional Disease Information for WAC-AS1

No disorders were found for WAC-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WAC-AS1 Gene

Publications for WAC-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3
  2. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for WAC-AS1 Gene

Sources for WAC-AS1 Gene