Aliases for VWA8-AS1 Gene

Subcategory (RNA class) for VWA8-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for VWA8-AS1 Gene

  • VWA8 Antisense RNA 1 (Head To Head) 2 3 5
  • VWA8-AS1 2 5 165
  • VWA8 Antisense RNA 1 (Non-Protein Coding) 2 3
  • VWA8 Antisense RNA 1 2
  • NONHSAG013337.2 91
  • HSALNG0096646 164

External Ids for VWA8-AS1 Gene

Previous GeneCards Identifiers for VWA8-AS1 Gene

  • GC13P042537

Summaries for VWA8-AS1 Gene

GeneCards Summary for VWA8-AS1 Gene

VWA8-AS1 (VWA8 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with VWA8-AS1 include Testicular Leukemia.

Additional gene information for VWA8-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for VWA8-AS1 Gene

Genomics for VWA8-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for VWA8-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J041959 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas 600.4 +5.7 5694 4.6 HNRNPL GATAD2A PRDM10 ZNF629 TFE3 KDM1A POLR2A LARP7 GABPA PRDM1 VWA8 VWA8-AS1 DGKH ENSG00000231530 RNU6-74P AKAP11 RF00017-1402
GH13J041955 Enhancer 0.7 Ensembl 600.7 +0.1 93 1 ZNF629 GABPA SP1 CEBPA MTA3 FOXA2 YY1 ZBTB33 ATF2 JUND VWA8-AS1 VWA8 RGCC
GH13J041972 Enhancer 0.8 Ensembl ENCODE 0.4 +18.2 18195 2.4 CTCF SOX13 SP1 CEBPA MNT NFE2 MAFF MAFK POLR2A FOXP1 VWA8 RGCC RF00017-1402 VWA8-AS1 LOC105370176 DGKH
GH13J041971 Enhancer 0.7 Ensembl ENCODE 0.4 +14.8 14793 4 IKZF2 SP1 HMBOX1 SPI1 HNF4A ZNF146 RXRA TBX21 MTA2 IKZF1 DGKH ENSG00000231530 VWA8 VWA8-AS1 RF00017-1402
GH13J041942 Enhancer 0.7 Ensembl 0.4 -11.9 -11894 3 GATAD2A CTCF IKZF1 FOXA1 RXRB CEBPA SOX13 TCF7 CEBPB FOXA2 RNU6-74P DGKH ENSG00000231530 VWA8-AS1 KARS1P1 VWA8 RGCC
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around VWA8-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for VWA8-AS1 Gene

Genomic Locations for VWA8-AS1 Gene
chr13:41,955,808-41,981,565
(GRCh38/hg38)
Size:
25,758 bases
Orientation:
Plus strand
chr13:42,535,305-42,555,701
(GRCh37/hg19)
Size:
20,397 bases
Orientation:
Plus strand

Genomic View for VWA8-AS1 Gene

Genes around VWA8-AS1 on UCSC Golden Path with GeneCards custom track
VWA8-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
VWA8-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VWA8-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VWA8-AS1 Gene

Proteins for VWA8-AS1 Gene

Post-translational modifications for VWA8-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VWA8-AS1 Gene

Domains & Families for VWA8-AS1 Gene

Gene Families for VWA8-AS1 Gene

genes like me logo Genes that share domains with VWA8-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for VWA8-AS1 Gene

Function for VWA8-AS1 Gene

Phenotypes From GWAS Catalog for VWA8-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VWA8-AS1 Gene

Localization for VWA8-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for VWA8-AS1 Gene

Pathways & Interactions for VWA8-AS1 Gene

PathCards logo

SuperPathways for VWA8-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for VWA8-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for VWA8-AS1 Gene

Drugs & Compounds for VWA8-AS1 Gene

No Compound Related Data Available

Transcripts for VWA8-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for VWA8-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000781BF0_9606 lncRNA 474 4

Ensembl: ENST00000612345 (view in UCSC) ,

LncBook: HSALNT0200601,

LNCipedia: VWA8-AS1:1,

NONCODE: NONHSAT165588.1,

URS000076A979_9606 lncRNA 2079 3

Ensembl: ENST00000611103 (view in UCSC) ,

LNCipedia: VWA8-AS1:3,

NONCODE: NONHSAT033421.2,

URS000075A2D4_9606 lncRNA 2079 2

HGNC: 44270,

RefSeq: NR_039974,

URS00008B97AA_9606 lncRNA 2078 1

LNCipedia: VWA8-AS1:2,

URS00009B6B1F_9606 lncRNA 2078 1

NONCODE: NONHSAT165589.1,

VWA8-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for VWA8-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for VWA8-AS1 Gene

No ASD Table

Relevant External Links for VWA8-AS1 Gene

GeneLoc Exon Structure for
VWA8-AS1

Expression for VWA8-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for VWA8-AS1

SOURCE GeneReport for Unigene cluster for VWA8-AS1 Gene:

Hs.147766
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VWA8-AS1 Gene

Orthologs for VWA8-AS1 Gene

Evolution for VWA8-AS1 Gene

ENSEMBL:
Gene Tree for VWA8-AS1 (if available)
TreeFam:
Gene Tree for VWA8-AS1 (if available)

No data available for Orthologs for VWA8-AS1 Gene

Paralogs for VWA8-AS1 Gene

No data available for Paralogs for VWA8-AS1 Gene

Variants for VWA8-AS1 Gene

Additional dbSNP identifiers (rs#s) for VWA8-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for VWA8-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv3127n54 CNV loss 21841781
dgv75e55 CNV loss 17911159
nsv1038912 CNV gain 25217958
nsv832588 CNV gain 17160897

Additional Variant Information for VWA8-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VWA8-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for VWA8-AS1 Gene

Disorders for VWA8-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for VWA8-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
testicular leukemia
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for VWA8-AS1

genes like me logo Genes that share disorders with VWA8-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for VWA8-AS1 Gene

Publications for VWA8-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

Products for VWA8-AS1 Gene

Sources for VWA8-AS1 Gene