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Aliases for VTRNA3-1P Gene

Subcategory (RNA class) for VTRNA3-1P Gene

vault RNA

Aliases for VTRNA3-1P Gene

  • Vault RNA 3-1, Pseudogene 2 3 5
  • Vault RNA 3 (Pseudogene) 2 3
  • Vault RNA Component 4 Pseudogene 3
  • Vault RNA Component 4 2
  • VAULTRC4 3
  • VTRNA3P 3
  • Hvg-4 3
  • HVG4 3
  • HVGX 3

External Ids for VTRNA3-1P Gene

ORGUL Members for VTRNA3-1P Gene

Previous HGNC Symbols for VTRNA3-1P Gene

  • VAULTRC4
  • VTRNA3P

Summaries for VTRNA3-1P Gene

GeneCards Summary for VTRNA3-1P Gene

VTRNA3-1P (Vault RNA 3-1, Pseudogene) is a Pseudogene, and is affiliated with the vault RNA class.

Additional gene information for VTRNA3-1P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VTRNA3-1P Gene

Genomics for VTRNA3-1P Gene

GeneHancer (GH) Regulatory Elements for VTRNA3-1P Gene

Promoters and enhancers for VTRNA3-1P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI053481 Enhancer 0.6 Ensembl 0.4 +19.8 19792 0.4 CTCF ZNF654 RAD21 OSR2 SMC3 ZNF143 PRDM10 SETDB1 DEK GC0XP053462 VTRNA3-1P GC0XM053556 GC0XM053560
GH0XI053479 Enhancer 0.3 ENCODE 0.4 +17.4 17395 0.2 SP1 GC0XP053462 VTRNA3-1P GC0XM053556 GC0XM053560
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around VTRNA3-1P on UCSC Golden Path with GeneCards custom track

Genomic Locations for VTRNA3-1P Gene

Genomic Locations for VTRNA3-1P Gene
chrX:53,462,209-53,462,310
(GRCh38/hg38)
Size:
102 bases
Orientation:
Plus strand
chrX:53,489,150-53,489,251
(GRCh37/hg19)

Genomic View for VTRNA3-1P Gene

Genes around VTRNA3-1P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VTRNA3-1P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VTRNA3-1P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VTRNA3-1P Gene

Proteins for VTRNA3-1P Gene

Post-translational modifications for VTRNA3-1P Gene

No Post-translational modifications

No data available for DME Specific Peptides for VTRNA3-1P Gene

Domains & Families for VTRNA3-1P Gene

Gene Families for VTRNA3-1P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with VTRNA3-1P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VTRNA3-1P Gene

Function for VTRNA3-1P Gene

Phenotypes From GWAS Catalog for VTRNA3-1P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VTRNA3-1P Gene

Localization for VTRNA3-1P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for VTRNA3-1P Gene

Pathways & Interactions for VTRNA3-1P Gene

SuperPathways for VTRNA3-1P Gene

No Data Available

Interacting Proteins for VTRNA3-1P Gene

Gene Ontology (GO) - Biological Process for VTRNA3-1P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VTRNA3-1P Gene

Drugs & Compounds for VTRNA3-1P Gene

No Compound Related Data Available

Transcripts for VTRNA3-1P Gene

mRNA/cDNA for VTRNA3-1P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for VTRNA3-1P Gene

No ASD Table

Relevant External Links for VTRNA3-1P Gene

GeneLoc Exon Structure for
VTRNA3-1P
ECgene alternative splicing isoforms for
VTRNA3-1P

Expression for VTRNA3-1P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for VTRNA3-1P Gene

genes like me logo Genes that share expression patterns with VTRNA3-1P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VTRNA3-1P Gene

Orthologs for VTRNA3-1P Gene

This gene was present in the common ancestor of chordates.

Orthologs for VTRNA3-1P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Vault 34
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia Vault 34
  • 59 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia Vault 34
  • 46 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm25403 34
  • 46 (a)
ManyToMany
chicken
(Gallus gallus)
Aves Vault 34
  • 66 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia Vault 34
  • 56 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii Vault 34 34 34 34
  • 45 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea Vault 34
  • 49 (a)
OneToMany
Species where no ortholog for VTRNA3-1P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for VTRNA3-1P Gene

ENSEMBL:
Gene Tree for VTRNA3-1P (if available)
TreeFam:
Gene Tree for VTRNA3-1P (if available)

Paralogs for VTRNA3-1P Gene

No data available for Paralogs for VTRNA3-1P Gene

Variants for VTRNA3-1P Gene

Additional Variant Information for VTRNA3-1P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VTRNA3-1P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for VTRNA3-1P Gene

Disorders for VTRNA3-1P Gene

No disorders were found for VTRNA3-1P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for VTRNA3-1P Gene

Publications for VTRNA3-1P Gene

  1. Epstein-barr virus-induced expression of a novel human vault RNA. (PMID: 19298825) Nandy C … Polacek N (Journal of molecular biology 2009) 2 3 58
  2. Evolution of vault RNAs. (PMID: 19491402) Stadler PF … Ullmann K (Molecular biology and evolution 2009) 2 3 58
  3. Identification of conserved vault RNA expression elements and a non-expressed mouse vault RNA gene. (PMID: 12758122) Kickhoefer VA … Rome LH (Gene 2003) 2 3 58
  4. Association study of 21 circadian genes with bipolar I disorder, schizoaffective disorder, and schizophrenia. (PMID: 19839995) Mansour HA … Nimgaonkar VL (Bipolar disorders 2009) 3 58
  5. Vaults and telomerase share a common subunit, TEP1. (PMID: 10551828) Kickhoefer VA … Rome LH (The Journal of biological chemistry 1999) 3 58

Products for VTRNA3-1P Gene

Sources for VTRNA3-1P Gene

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