Aliases for VTRNA2-2P Gene

Aliases for VTRNA2-2P Gene

  • Vault RNA 2-2, Pseudogene 2 3 5

External Ids for VTRNA2-2P Gene

Previous GeneCards Identifiers for VTRNA2-2P Gene

  • GC00U935536

Summaries for VTRNA2-2P Gene

GeneCards Summary for VTRNA2-2P Gene

VTRNA2-2P (Vault RNA 2-2, Pseudogene) is a Pseudogene.

Additional gene information for VTRNA2-2P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for VTRNA2-2P Gene

Genomics for VTRNA2-2P Gene

GeneHancer (GH) Regulatory Elements for VTRNA2-2P Gene

Promoters and enhancers for VTRNA2-2P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J065555 Enhancer 0.2 FANTOM5 500.7 +0.1 107 0 RF00006-001 VTRNA2-2P RF00017-3221 RN7SL635P lnc-SPRED2-12 LOC101927533
GH02J065553 Promoter/Enhancer 1.3 Ensembl ENCODE 0.7 +2.1 2098 0.9 ZNF217 CTCF AFF1 REST ZBTB25 MYC CTBP1 RAD21 TRIM22 TEAD1 RF00006-001 VTRNA2-2P RF00017-3221 RN7SL635P lnc-SPRED2-12 LOC101927533
GH02J065545 Enhancer 0.9 Ensembl ENCODE 0.4 +9.4 9433 1.8 TBX3 NR2F2 MXD4 FOSL1 FOS NR2F1 PKNOX1 FOSL2 STAT1 HOMEZ RF00017-3221 RN7SL635P lnc-SPRED2-12 ENSG00000237979 ACTR2 RF00006-001 VTRNA2-2P LOC101927533
GH02J065576 Enhancer 1 FANTOM5 ENCODE 0.4 -21.6 -21583 2 TCF12 JUND FOS CUX1 EP300 TEAD1 ZEB1 CREB1 FOXA2 FOSL1 RAB1A lnc-ACTR2-9 RF00006-001 VTRNA2-2P LOC101927533
GH02J065566 Enhancer 0.8 ENCODE 0.4 -11.5 -11528 2.1 USF1 ZIC2 POLR2A RFX1 KLF4 TOE1 FOXA2 FOSL1 BDP1 FOS CEP68 lnc-ACTR2-9 RF00006-001 VTRNA2-2P LOC101927533
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around VTRNA2-2P on UCSC Golden Path with GeneCards custom track

Genomic Locations for VTRNA2-2P Gene

Genomic Locations for VTRNA2-2P Gene
chr2:65,555,432-65,555,534
(GRCh38/hg38)
Size:
103 bases
Orientation:
Minus strand

Genomic View for VTRNA2-2P Gene

Genes around VTRNA2-2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VTRNA2-2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VTRNA2-2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VTRNA2-2P Gene

Proteins for VTRNA2-2P Gene

Post-translational modifications for VTRNA2-2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for VTRNA2-2P Gene

Domains & Families for VTRNA2-2P Gene

Gene Families for VTRNA2-2P Gene

HGNC:
genes like me logo Genes that share domains with VTRNA2-2P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for VTRNA2-2P Gene

Function for VTRNA2-2P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VTRNA2-2P Gene

Localization for VTRNA2-2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for VTRNA2-2P Gene

Pathways & Interactions for VTRNA2-2P Gene

PathCards logo

SuperPathways for VTRNA2-2P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for VTRNA2-2P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for VTRNA2-2P Gene

Drugs & Compounds for VTRNA2-2P Gene

No Compound Related Data Available

Transcripts for VTRNA2-2P Gene

mRNA/cDNA for VTRNA2-2P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for VTRNA2-2P Gene

No ASD Table

Relevant External Links for VTRNA2-2P Gene

GeneLoc Exon Structure for
VTRNA2-2P

Expression for VTRNA2-2P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for VTRNA2-2P Gene

genes like me logo Genes that share expression patterns with VTRNA2-2P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VTRNA2-2P Gene

Orthologs for VTRNA2-2P Gene

This gene was present in the common ancestor of chordates.

Orthologs for VTRNA2-2P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Vault 31
  • 99 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia Vault 31 31 31 31 31 31 31
  • 61 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia Vault 31
  • 50 (a)
ManyToMany
chicken
(Gallus gallus)
Aves Vault 31
  • 54 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia Vault 31
  • 54 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii Vault 31 31 31
  • 51 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea Vault 31
  • 43 (a)
OneToMany
Species where no ortholog for VTRNA2-2P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for VTRNA2-2P Gene

ENSEMBL:
Gene Tree for VTRNA2-2P (if available)
TreeFam:
Gene Tree for VTRNA2-2P (if available)

Paralogs for VTRNA2-2P Gene

No data available for Paralogs for VTRNA2-2P Gene

Variants for VTRNA2-2P Gene

Additional Variant Information for VTRNA2-2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VTRNA2-2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for VTRNA2-2P Gene

Disorders for VTRNA2-2P Gene

No disorders were found for VTRNA2-2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for VTRNA2-2P Gene

Publications for VTRNA2-2P Gene

No publications were found for VTRNA2-2P Gene.

No data available for Mastermind for VTRNA2-2P Gene

Products for VTRNA2-2P Gene

Sources for VTRNA2-2P Gene