VTRNA2-2P Gene (Pseudogene)

Vault RNA 2-2, Pseudogene

GC02M065555
GIFtS:
6
See more...

Aliases for VTRNA2-2P Gene

Aliases for VTRNA2-2P Gene

  • Vault RNA 2-2, Pseudogene 2 3 5
  • VTRNA2-2P 5

External Ids for VTRNA2-2P Gene

Previous GeneCards Identifiers for VTRNA2-2P Gene

  • GC00U935536

Summaries for VTRNA2-2P Gene

GeneCards Summary for VTRNA2-2P Gene

VTRNA2-2P (Vault RNA 2-2, Pseudogene) is a Pseudogene.

Additional gene information for VTRNA2-2P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for VTRNA2-2P Gene

Genomics for VTRNA2-2P Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for VTRNA2-2P Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around VTRNA2-2P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for VTRNA2-2P Gene

Genomic Locations for VTRNA2-2P Gene
chr2:65,555,432-65,555,534
(GRCh38/hg38)
Size:
103 bases
Orientation:
Minus strand

Genomic View for VTRNA2-2P Gene

Genes around VTRNA2-2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VTRNA2-2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VTRNA2-2P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for VTRNA2-2P Gene

Proteins for VTRNA2-2P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for VTRNA2-2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for VTRNA2-2P Gene

Domains & Families for VTRNA2-2P Gene

Gene Families for VTRNA2-2P Gene

HGNC:
genes like me logo Genes that share domains with VTRNA2-2P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for VTRNA2-2P Gene

Function for VTRNA2-2P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VTRNA2-2P Gene

Localization for VTRNA2-2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for VTRNA2-2P Gene

Pathways & Interactions for VTRNA2-2P Gene

PathCards logo

SuperPathways for VTRNA2-2P Gene

No Data Available

Gene Ontology (GO) - Biological Process for VTRNA2-2P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for VTRNA2-2P Gene

Drugs & Compounds for VTRNA2-2P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for VTRNA2-2P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for VTRNA2-2P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for VTRNA2-2P Gene

No ASD Table

Relevant External Links for VTRNA2-2P Gene

GeneLoc Exon Structure for
VTRNA2-2P

Expression for VTRNA2-2P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for VTRNA2-2P Gene

mRNA expression in normal human tissues for VTRNA2-2P Gene
mRNA expression by GTEx for VTRNA2-2P Gene
genes like me logo Genes that share expression patterns with VTRNA2-2P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VTRNA2-2P Gene

Orthologs for VTRNA2-2P Gene

This gene was present in the common ancestor of chordates.

Orthologs for VTRNA2-2P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia Vault 31
  • 99 (a)
 OneToOne
Platypus
(Ornithorhynchus anatinus)
 Mammalia Vault 31 31 31 31 31 31 31
  • 61 (a)
 ManyToMany
Oppossum
(Monodelphis domestica)
 Mammalia Vault 31
  • 50 (a)
 ManyToMany
Chicken
(Gallus gallus)
 Aves Vault 31
  • 54 (a)
 OneToMany
Lizard
(Anolis carolinensis)
 Reptilia Vault 31
  • 54 (a)
 ManyToMany
Zebrafish
(Danio rerio)
 Actinopterygii Vault 31 31 31
  • 47 (a)
 ManyToMany
Sea Squirt
(Ciona savignyi)
 Ascidiacea Vault 31
  • 43 (a)
 OneToMany
Species where no ortholog for VTRNA2-2P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for VTRNA2-2P Gene

ENSEMBL:
Gene Tree for VTRNA2-2P (if available)
TreeFam:
Gene Tree for VTRNA2-2P (if available)

Paralogs for VTRNA2-2P Gene

No data available for Paralogs for VTRNA2-2P Gene

Variants for VTRNA2-2P Gene

Additional Variant Information for VTRNA2-2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VTRNA2-2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for VTRNA2-2P Gene

Disorders for VTRNA2-2P Gene

No disorders were found for VTRNA2-2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for VTRNA2-2P Gene

Publications for VTRNA2-2P Gene

No publications were found for VTRNA2-2P Gene.

No data available for Mastermind for VTRNA2-2P Gene

Products for VTRNA2-2P Gene

Sources for VTRNA2-2P Gene