Aliases for VPS9D1-AS1 Gene

Subcategory (RNA class) for VPS9D1-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for VPS9D1-AS1 Gene

  • VPS9D1 Antisense RNA 1 2 3 5
  • C-Myc-Upregulated LncRNA 2 3
  • VPS9D1-AS1 2 5
  • MYU 2 3
  • NONHSAG020361.2 91
  • HSALNG0141629 164

External Ids for VPS9D1-AS1 Gene

Previous GeneCards Identifiers for VPS9D1-AS1 Gene

  • GC16P089778

Summaries for VPS9D1-AS1 Gene

GeneCards Summary for VPS9D1-AS1 Gene

VPS9D1-AS1 (VPS9D1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with VPS9D1-AS1 include Gastric Cancer.

Additional gene information for VPS9D1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for VPS9D1-AS1 Gene

Genomics for VPS9D1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for VPS9D1-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around VPS9D1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for VPS9D1-AS1 Gene

Genomic Locations for VPS9D1-AS1 Gene
chr16:89,711,855-89,718,165
(GRCh38/hg38)
Size:
6,311 bases
Orientation:
Plus strand
chr16:89,778,264-89,784,573
(GRCh37/hg19)
Size:
6,310 bases
Orientation:
Plus strand

Genomic View for VPS9D1-AS1 Gene

Genes around VPS9D1-AS1 on UCSC Golden Path with GeneCards custom track
VPS9D1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
VPS9D1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VPS9D1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VPS9D1-AS1 Gene

Proteins for VPS9D1-AS1 Gene

Post-translational modifications for VPS9D1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VPS9D1-AS1 Gene

Domains & Families for VPS9D1-AS1 Gene

Gene Families for VPS9D1-AS1 Gene

genes like me logo Genes that share domains with VPS9D1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for VPS9D1-AS1 Gene

Function for VPS9D1-AS1 Gene

Phenotypes From GWAS Catalog for VPS9D1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VPS9D1-AS1 Gene

Localization for VPS9D1-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for VPS9D1-AS1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for VPS9D1-AS1 Gene

Pathways & Interactions for VPS9D1-AS1 Gene

PathCards logo

SuperPathways for VPS9D1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for VPS9D1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for VPS9D1-AS1 Gene

Drugs & Compounds for VPS9D1-AS1 Gene

No Compound Related Data Available

Transcripts for VPS9D1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for VPS9D1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000003F392_9606 lncRNA 1753 4

HGNC: 48915,

RefSeq: NR_036480,

Ensembl: ENST00000562866 (view in UCSC) ,

NONCODE: NONHSAT144573.2,

URS00002CAC66_9606 lncRNA 931 2

Ensembl: ENST00000562298 (view in UCSC) ,

NONCODE: NONHSAT144574.2,

URS0000EB9862_9606 lncRNA 1757 1

LncBook: HSALNT0289518,

VPS9D1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for VPS9D1-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for VPS9D1-AS1 Gene

No ASD Table

Relevant External Links for VPS9D1-AS1 Gene

GeneLoc Exon Structure for
VPS9D1-AS1

Expression for VPS9D1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for VPS9D1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for VPS9D1-AS1 Gene

This gene is overexpressed in Whole Blood (x5.9).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for VPS9D1-AS1

genes like me logo Genes that share expression patterns with VPS9D1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VPS9D1-AS1 Gene

Orthologs for VPS9D1-AS1 Gene

Evolution for VPS9D1-AS1 Gene

ENSEMBL:
Gene Tree for VPS9D1-AS1 (if available)
TreeFam:
Gene Tree for VPS9D1-AS1 (if available)

No data available for Orthologs for VPS9D1-AS1 Gene

Paralogs for VPS9D1-AS1 Gene

No data available for Paralogs for VPS9D1-AS1 Gene

Variants for VPS9D1-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for VPS9D1-AS1 Gene

SNP ID Clinical significance and condition Chr 16 pos Variation AA Info Type
715687 Benign: not provided 89,711,882(+) A/G NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
768806 Benign: not provided 89,712,511(+) T/C SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for VPS9D1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for VPS9D1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2762221 CNV gain+loss 21179565
nsv1931 CNV insertion 18451855
nsv428331 CNV gain+loss 18775914
nsv457623 CNV gain 19166990
nsv482951 CNV loss 15286789
nsv509639 CNV insertion 20534489
nsv516241 CNV loss 19592680
nsv573743 CNV gain 21841781
nsv833330 CNV loss 17160897
nsv952079 CNV deletion 24416366

Additional Variant Information for VPS9D1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VPS9D1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for VPS9D1-AS1 Gene

Disorders for VPS9D1-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for VPS9D1-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
gastric cancer
  • gastric cancer, somatic
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with VPS9D1-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for VPS9D1-AS1 Gene

Publications for VPS9D1-AS1 Gene

  1. MYU, a Target lncRNA for Wnt/c-Myc Signaling, Mediates Induction of CDK6 to Promote Cell Cycle Progression. (PMID: 27568568) Kawasaki Y … Akiyama T (Cell reports 2016) 2 3
  2. SPOP promotes ATF2 ubiquitination and degradation to suppress prostate cancer progression. (PMID: 29996942) Ma J … Wang C (Journal of experimental & clinical cancer research : CR 2018) 3
  3. Long non-coding RNA MYU promotes prostate cancer proliferation by mediating the miR-184/c-Myc axis. (PMID: 30132573) Wang J … Gao S (Oncology reports 2018) 3
  4. Long noncoding RNA VPS9D1-AS1 overexpression predicts a poor prognosis in non-small cell lung cancer. (PMID: 30119235) Tan J … Yang L (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2018) 3
  5. Decreased expression of lncRNA VPS9D1-AS1 in gastric cancer and its clinical significance. (PMID: 29036784) Chen M … Yang X (Cancer biomarkers : section A of Disease markers 2017) 3

Products for VPS9D1-AS1 Gene

Sources for VPS9D1-AS1 Gene