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Aliases for VPS26BP1 Gene

Subcategory (RNA class) for VPS26BP1 Gene

lncRNA

Aliases for VPS26BP1 Gene

  • VPS26B Pseudogene 1 2 3 5
  • Vacuolar Protein Sorting 26 Homolog B (S. Pombe) Pseudogene 1 2

External Ids for VPS26BP1 Gene

ORGUL Members for VPS26BP1 Gene

Summaries for VPS26BP1 Gene

GeneCards Summary for VPS26BP1 Gene

VPS26BP1 (VPS26B Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for VPS26BP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VPS26BP1 Gene

Genomics for VPS26BP1 Gene

GeneHancer (GH) Regulatory Elements for VPS26BP1 Gene

Promoters and enhancers for VPS26BP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I047961 Enhancer 0.7 ENCODE 550.8 -0.9 -949 0.9 SMAD1 BMI1 RFX5 GATA3 ZNF766 RCOR1 CHD2 ZNF639 STAT1 RFX1 VPS26BP1 CDC25A NDUFB1P1 RNU7-128P DHX30 ENSG00000270285 MAP4
GH03I048012 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 0.2 -54.0 -54042 5 HDGF ATF1 FOXA2 ARNT TCF12 FOS ATF7 SP5 ZNF592 NFIL3 MAP4 ZNF589 NDUFB1P1 RNU7-128P CDC25A IP6K2 NME6 ENSG00000270285 VPS26BP1
GH03I047989 Enhancer 0.8 ENCODE 0.3 -29.0 -29006 1.1 RB1 SIN3A ZNF2 DNMT3B RAD21 RFX5 CHAMP1 SLC30A9 ARID2 ZNF143 NDUFB1P1 RNU7-128P CDC25A VPS26BP1 ENSG00000270285 MAP4
GH03I048033 Enhancer 1.1 Ensembl ENCODE 0.2 -73.5 -73520 2 ATF1 INSM2 FEZF1 ZNF2 ZEB1 ZNF366 ZSCAN5C ATF7 IKZF2 RUNX3 NDUFB1P1 RNU7-128P CDC25A KLHL18 ENSG00000270285 MAP4 VPS26BP1
GH03I047983 Enhancer 0.7 ENCODE 0.3 -23.3 -23280 1.2 JUN KLF17 ZNF2 GTF3C2 POLR3A FOSL2 FOS ZNF600 KLF8 ZNF362 DHX30 NDUFB1P1 RNU7-128P CDC25A PTPN23 VPS26BP1 ENSG00000270285 MAP4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around VPS26BP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for VPS26BP1 Gene

Genomic Locations for VPS26BP1 Gene
chr3:47,960,327-47,961,081
(GRCh38/hg38)
Size:
755 bases
Orientation:
Minus strand
chr3:48,001,817-48,002,571
(GRCh37/hg19)

Genomic View for VPS26BP1 Gene

Genes around VPS26BP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VPS26BP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VPS26BP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VPS26BP1 Gene

Proteins for VPS26BP1 Gene

Post-translational modifications for VPS26BP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VPS26BP1 Gene

Domains & Families for VPS26BP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VPS26BP1 Gene

Function for VPS26BP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VPS26BP1 Gene

Localization for VPS26BP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for VPS26BP1 Gene

Pathways & Interactions for VPS26BP1 Gene

SuperPathways for VPS26BP1 Gene

No Data Available

Interacting Proteins for VPS26BP1 Gene

Gene Ontology (GO) - Biological Process for VPS26BP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VPS26BP1 Gene

Drugs & Compounds for VPS26BP1 Gene

No Compound Related Data Available

Transcripts for VPS26BP1 Gene

mRNA/cDNA for VPS26BP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for VPS26BP1 Gene

No ASD Table

Relevant External Links for VPS26BP1 Gene

GeneLoc Exon Structure for
VPS26BP1
ECgene alternative splicing isoforms for
VPS26BP1

Expression for VPS26BP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for VPS26BP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of VPS26BP1 Gene:

VPS26BP1
genes like me logo Genes that share expression patterns with VPS26BP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VPS26BP1 Gene

Orthologs for VPS26BP1 Gene

Evolution for VPS26BP1 Gene

ENSEMBL:
Gene Tree for VPS26BP1 (if available)
TreeFam:
Gene Tree for VPS26BP1 (if available)

No data available for Orthologs for VPS26BP1 Gene

Paralogs for VPS26BP1 Gene

No data available for Paralogs for VPS26BP1 Gene

Variants for VPS26BP1 Gene

Additional Variant Information for VPS26BP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VPS26BP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for VPS26BP1 Gene

Disorders for VPS26BP1 Gene

No disorders were found for VPS26BP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for VPS26BP1 Gene

Publications for VPS26BP1 Gene

No publications were found for VPS26BP1 Gene.

Products for VPS26BP1 Gene

Sources for VPS26BP1 Gene

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