Aliases for VPS25 Gene
Aliases for VPS25 Gene
External Ids for VPS25 Gene
- HGNC: 28122
- Entrez Gene: 84313
- Ensembl: ENSG00000131475
- OMIM: 610907
- UniProtKB: Q9BRG1
Previous GeneCards Identifiers for VPS25 Gene
- GC17P038179
- GC17P040925
- GC17P036689
Summaries for VPS25 Gene
-
This gene encodes a protein that is a subunit of the endosomal sorting complex required for transport II (ESCRT-II). This protein complex functions in sorting of ubiquitinated membrane proteins during endocytosis. A pseudogene of this gene is present on chromosome 1. [provided by RefSeq, Jul 2013]
GeneCards Summary for VPS25 Gene
VPS25 (Vacuolar Protein Sorting 25 Homolog) is a Protein Coding gene. Among its related pathways are Delta508-CFTR traffic / Sorting endosome formation in CF and Delta508-CFTR traffic / ER-to-Golgi in CF. Gene Ontology (GO) annotations related to this gene include protein homodimerization activity and protein N-terminus binding.
UniProtKB/Swiss-Prot for VPS25 Gene
-
Component of the ESCRT-II complex (endosomal sorting complex required for transport II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex. The ESCRT-II complex may also play a role in transcription regulation, possibly via its interaction with ELL. The ESCRT-II complex may be involved in facilitating the budding of certain RNA viruses.
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VPS25 Gene
Genomics for VPS25 Gene
GeneHancer (GH) Regulatory Elements for VPS25 Gene
Promoters and enhancers for VPS25 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around VPS25 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for VPS25 Gene
Genomic Locations for VPS25 Gene
- chr17:42,773,436-42,779,600
- (GRCh38/hg38)
- Size:
- 6,165 bases
- Orientation:
- Plus strand
- chr17:40,925,454-40,931,617
- (GRCh37/hg19)
Genomic View for VPS25 Gene
Genes around VPS25 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 17q21.2 by Ensembl
- 17q21.2 by Entrez Gene
- 17q21.31 by HGNC
VPS25 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for VPS25 Gene
Proteins for VPS25 Gene
-
Protein details for VPS25 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9BRG1-VPS25_HUMAN
- Recommended name:
- Vacuolar protein-sorting-associated protein 25
- Protein Accession:
- Q9BRG1
- B2R581
Protein attributes for VPS25 Gene
- Size:
- 176 amino acids
- Molecular mass:
- 20748 Da
- Quaternary structure:
-
- Component of a complex at least composed of ELL, SNF8/EAP30, VPS25/EAP20 and VPS36/EAP45 (By similarity). Component of the endosomal sorting complex required for transport II (ESCRT-II), composed of SNF8, VPS36 and 2 copies of VPS25. Interacts with CFTR; the interaction requires misfolded CFTR. Interacts (via C-terminal half) with the ESCRT-III subunit CHMP6 (via N-terminal half).
Protein Expression for VPS25 Gene
Post-translational modifications for VPS25 Gene
- Ubiquitination at isoforms=64
Other Protein References for VPS25 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
-
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- Novus Biologicals Antibodies for VPS25
-
Abcam antibodies for VPS25
- Invitrogen Antibodies for VPS25
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-
Santa Cruz Biotechnology (SCBT) Antibodies for VPS25
Protein Products
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-
Abcam proteins for VPS25
Assay Products
No data available for DME Specific Peptides for VPS25 Gene
Domains & Families for VPS25 Gene
Gene Families for VPS25 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Predicted intracellular proteins
Protein Domains for VPS25 Gene
- InterPro:
- ProtoNet:
Suggested Antigen Peptide Sequences for VPS25 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q9BRG1- Family:
-
- Belongs to the VPS25 family.
Function for VPS25 Gene
Molecular function for VPS25 Gene
- UniProtKB/Swiss-Prot Function:
- Component of the ESCRT-II complex (endosomal sorting complex required for transport II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex. The ESCRT-II complex may also play a role in transcription regulation, possibly via its interaction with ELL. The ESCRT-II complex may be involved in facilitating the budding of certain RNA viruses.
Phenotypes From GWAS Catalog for VPS25 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005198 | structural molecule activity | IBA | -- |
| GO:0005515 | protein binding | IPI | 14505570 |
| GO:0042803 | protein homodimerization activity | IPI | 14519844 |
| GO:0047485 | protein N-terminus binding | IPI | 16973552 |
Phenotypes for VPS25 Gene
- MGI mutant phenotypes for VPS25:
- inferred from 3 alleles
- GenomeRNAi human phenotypes for VPS25:
Animal Model Products
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-
-
ViGene Biosciences lentiviral particle packaged cDNA for VPS25 gene
-
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- Search ViGene Biosciences for VPS25
CRISPR Products
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OriGene CRISPR knockouts for VPS25
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-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for VPS25
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miRNA for VPS25 Gene
- miRTarBase miRNAs that target VPS25
miRNA Products
- Search ViGene Biosciences for VPS25
Inhibitory RNA Products
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Clone Products
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-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- genomics-online: cdna clones - Search results for available VPS25 gene related products
- orf clones - Search results for available VPS25 gene related products
- Applied Biological Materials Clones for VPS25
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Cell Line Products
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ViGene Biosciences adenoviral particle packaged cDNA for VPS25 gene
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No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for VPS25 Gene
Localization for VPS25 Gene
Subcellular locations from UniProtKB/Swiss-Prot for VPS25 Gene
- Cytoplasm. Endosome membrane. Nucleus, nucleoplasm. Note=Distributes diffusely throughout the cytoplasm and nucleoplasm, but exhibits a punctate distribution on coexpression with CHMP6.
| Compartment | Confidence |
|---|---|
| extracellular | 5 |
| nucleus | 5 |
| cytosol | 5 |
| endosome | 5 |
| lysosome | 1 |
- Centrosome (2)
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000814 | ESCRT II complex | TAS | 20588296 |
| GO:0005634 | nucleus | IEA,IDA | 16371348 |
| GO:0005654 | nucleoplasm | IEA | -- |
| GO:0005737 | cytoplasm | IDA,IEA | 16973552 |
| GO:0005768 | endosome | IEA | -- |
Pathways & Interactions for VPS25 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Vesicle-mediated transport | ||
| 2 | Endocytosis | ||
| 3 | Budding and maturation of HIV virion | ||
| 4 | Delta508-CFTR traffic / Sorting endosome formation in CF | ||
| 5 | Delta508-CFTR traffic / ER-to-Golgi in CF | ||
Pathways by source for VPS25 Gene
3 Reactome pathways for VPS25 Gene
1 KEGG pathway for VPS25 Gene
2 GeneGo (Thomson Reuters) pathways for VPS25 Gene
Interacting Proteins for VPS25 Gene
Selected Interacting proteins:
ENSP00000253794
Q9BRG1-VPS25_HUMAN
for VPS25 Gene via
STRING
IID
MINT
UniProtKB
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0006351 | transcription, DNA-templated | IEA | -- |
| GO:0006355 | regulation of transcription, DNA-templated | IEA | -- |
| GO:0006810 | transport | IEA | -- |
| GO:0007175 | negative regulation of epidermal growth factor-activated receptor activity | IMP | 16973552 |
| GO:0015031 | protein transport | IEA | -- |
No data available for SIGNOR curated interactions for VPS25 Gene
Transcripts for VPS25 Gene
mRNA/cDNA for VPS25 Gene
- (2) REFSEQ mRNAs :
- (3) Additional mRNA sequences :
- (351) Selected AceView cDNA sequences:
- (6) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for VPS25 Gene
CRISPR Products
-
OriGene CRISPR knockouts for VPS25
- genomics-online: gRNA clones - Search results for available VPS25 gene related products
- Applied Biological Materials CRISPR for VPS25
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for VPS25
- GenScript: Design CRISPR guide RNA sequences for VPS25
miRNA Products
- Search ViGene Biosciences for VPS25
Inhibitory RNA Products
- Origene RNAi, sirna, and shrna products in human, mouse, rat for VPS25
- Browse OriGene Inhibitory RNA Products For VPS25
- genomics-online: shRNA clones - Search results for available VPS25 gene related products
-
ViGene Biosciences ready-to-package AAV shRNAs for VPS25 gene
Clone Products
- Sino Biological Human cDNA Clone for VPS25
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- VectorBuilder custom plasmid, inducible vectors for VPS25
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for VPS25
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- genomics-online: cdna clones - Search results for available VPS25 gene related products
- orf clones - Search results for available VPS25 gene related products
- Applied Biological Materials Clones for VPS25
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2a | · | 2b | ^ | 3a | · | 3b | ^ | 4 | ^ | 5a | · | 5b | ^ | 6a | · | 6b | · | 6c |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | - | ||||||||||||||||||||||
| SP2: | - | - | - | ||||||||||||||||||||||
| SP3: | - | - | |||||||||||||||||||||||
| SP4: | - | - | - | ||||||||||||||||||||||
| SP5: | - | ||||||||||||||||||||||||
| SP6: |
Expression for VPS25 Gene
This gene is overexpressed in Salivary gland (6.1).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for VPS25 Gene
- Elite partner
NURSA nuclear receptor signaling pathways regulating expression of VPS25 Gene:
VPS25SOURCE GeneReport for Unigene cluster for VPS25 Gene:
Hs.500165mRNA Expression by UniProt/SwissProt for VPS25 Gene:
Q9BRG1-VPS25_HUMAN
Tissue specificity:
Expressed at the mRNA level in kidney, liver, pancreas, and placenta. Lower levels of expression are found in heart, skeletal muscle, brain and lung.
Evidence on tissue expression from TISSUES for VPS25 Gene
- Nervous system(4.7)
- Skin(4.3)
- Lung(2)
Primer Products
-
OriGene qPCR primer pairs for VPS25
-
OriGene qPCR primer pairs and template standards for VPS25
- genomics-online: primer clones - Search results for available VPS25 gene related products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for VPS25 Gene
Orthologs for VPS25 Gene
This gene was present in the common ancestor of eukaryotes.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | VPS25 33 34 |
|
||
| dog (Canis familiaris) |
Mammalia | VPS25 33 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | VPS25 34 |
|
OneToOne | |
| cow (Bos Taurus) |
Mammalia | VPS25 33 34 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Vps25 33 |
|
||
| mouse (Mus musculus) |
Mammalia | Vps25 33 16 34 |
|
||
| platypus (Ornithorhynchus anatinus) |
Mammalia | VPS25 34 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | VPS25 33 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | VPS25 34 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | vps25 33 |
|
||
| African clawed frog (Xenopus laevis) |
Amphibia | Xl.7309 33 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | vps25 33 34 |
|
||
| rainbow trout (Oncorhynchus mykiss) |
Actinopterygii | Omy.3769 33 |
|
||
| fruit fly (Drosophila melanogaster) |
Insecta | Vps25 33 34 |
|
||
| African malaria mosquito (Anopheles gambiae) |
Insecta | AgaP_AGAP011497 33 |
|
||
| worm (Caenorhabditis elegans) |
Secernentea | vps-25 33 34 |
|
||
| baker's yeast (Saccharomyces cerevisiae) |
Saccharomycetes | VPS25 34 36 |
|
OneToOne | |
| thale cress (Arabidopsis thaliana) |
eudicotyledons | VPS25 33 |
|
||
| rice (Oryza sativa) |
Liliopsida | Os01g0658500 33 |
|
||
| bread mold (Neurospora crassa) |
Ascomycetes | NCU03898 33 |
|
||
| fission yeast (Schizosaccharomyces pombe) |
Schizosaccharomycetes | vps25 33 |
|
||
| sea squirt (Ciona savignyi) |
Ascidiacea | -- 34 |
|
OneToOne |
- Species where no ortholog for VPS25 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
Paralogs for VPS25 Gene
Pseudogenes.org Pseudogenes for VPS25 Gene
No data available for Paralogs for VPS25 Gene
Variants for VPS25 Gene
| SNP ID | Clin | Chr 17 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000801135 | -- | 42,773,602(+) | T/A/C | intron_variant | |
| rs1001297272 | -- | 42,771,730(+) | G/A | upstream_transcript_variant | |
| rs1001488901 | -- | 42,776,778(+) | A/G | 3_prime_UTR_variant, intron_variant | |
| rs1001754836 | -- | 42,777,764(+) | G/C | downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant | |
| rs1002086122 | -- | 42,777,024(+) | G/A | 3_prime_UTR_variant, intron_variant |
Residual Variation Intolerance Score:
41.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
1.67;
31.90% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for VPS25 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- VPS25
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for VPS25 Gene
Disorders for VPS25 Gene
Additional Disease Information for VPS25
- Genetic Association Database
- (GAD)
- Human Genome Epidemiology Navigator
- (HuGE)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No disorders were found for VPS25 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VPS25 Gene
Publications for VPS25 Gene
- Human CHMP6, a myristoylated ESCRT-III protein, interacts directly with an ESCRT-II component EAP20 and regulates endosomal cargo sorting. (PMID: 15511219) Yorikawa C … Maki M (The Biochemical journal 2005) 2 3 4 58
- Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey SD … DREAM investigators (Diabetes care 2010) 3 44 58
- Structure and function of the ESCRT-II-III interface in multivesicular body biogenesis. (PMID: 19686684) Im YJ … Hurley JH (Developmental cell 2009) 3 4 58
- Integrated structural model and membrane targeting mechanism of the human ESCRT-II complex. (PMID: 18539118) Im YJ … Hurley JH (Developmental cell 2008) 3 4 58
- Human ESCRT-II complex and its role in human immunodeficiency virus type 1 release. (PMID: 16973552) Langelier C … Sundquist WI (Journal of virology 2006) 3 4 58
Products for VPS25 Gene
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- Invitrogen Antibodies for VPS25
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- VectorBuilder custom plasmid, inducible vectors for VPS25
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for VPS25
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- antibodies-online: Search results for 58 available VPS25 Antibodies ranked by validation data
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- antibodies-online: Search results for available VPS25 related products ranked by validation data
- antibodies-online: Search results for 10 available VPS25 Proteins ranked by validation data
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- ViGene Biosciences adenoviral particle packaged cDNA for VPS25 gene
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Sources for VPS25 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
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