VIM-AS1 Gene (RNA Gene)

VIM Antisense RNA 1

GC10M017172
GIFtS:
15
See more...

Aliases for VIM-AS1 Gene

Subcategory (RNA class) for VIM-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for VIM-AS1 Gene

  • VIM Antisense RNA 1 2 3 5
  • VIM-AS1 2 5 165
  • NONHSAG005321.2 91
  • NONHSAG005320.2 91
  • HSALNG0076432 164
  • HSALNG0076434 164

External Ids for VIM-AS1 Gene

Previous GeneCards Identifiers for VIM-AS1 Gene

  • GC10M017258

Summaries for VIM-AS1 Gene

GeneCards Summary for VIM-AS1 Gene

VIM-AS1 (VIM Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with VIM-AS1 include Colorectal Cancer and Cataract 30.

Additional gene information for VIM-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for VIM-AS1 Gene

Genomics for VIM-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for VIM-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around VIM-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for VIM-AS1 Gene

Genomic Locations for VIM-AS1 Gene
chr10:17,171,556-17,229,985
(GRCh38/hg38)
Size:
58,430 bases
Orientation:
Minus strand
chr10:17,256,238-17,271,984
(GRCh37/hg19)
Size:
15,747 bases
Orientation:
Minus strand

Genomic View for VIM-AS1 Gene

Genes around VIM-AS1 on UCSC Golden Path with GeneCards custom track
VIM-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
VIM-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VIM-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for VIM-AS1 Gene

Proteins for VIM-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for VIM-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VIM-AS1 Gene

Domains & Families for VIM-AS1 Gene

Gene Families for VIM-AS1 Gene

HGNC:
genes like me logo Genes that share domains with VIM-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for VIM-AS1 Gene

Function for VIM-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for VIM-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VIM-AS1 Gene

Localization for VIM-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for VIM-AS1 gene
Compartment Confidence
extracellular 1
cytoskeleton 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for VIM-AS1 Gene

Pathways & Interactions for VIM-AS1 Gene

PathCards logo

SuperPathways for VIM-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for VIM-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for VIM-AS1 Gene

Drugs & Compounds for VIM-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for VIM-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for VIM-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000C5DE6_9606 lncRNA 1351 4

Ensembl: ENST00000437232 (view in UCSC) ,

LncBook: HSALNT0159506,

LNCipedia: VIM-AS1:5,

NONCODE: NONHSAT011608.2,

URS000075B948_9606 lncRNA 1875 2

HGNC: 44879,

RefSeq: NR_108061,

URS0000410BCC_9606 lncRNA 918 2

Ensembl: ENST00000605833 (view in UCSC) ,

LNCipedia: VIM-AS1:1,

URS000075E007_9606 lncRNA 1351 1

RefSeq: NR_108060,

URS0000EF0A85_9606 lncRNA 1233 1

Ensembl: ENST00000664157 (view in UCSC) ,

VIM-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for VIM-AS1 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for VIM-AS1 Gene

No ASD Table

Relevant External Links for VIM-AS1 Gene

GeneLoc Exon Structure for
VIM-AS1

Expression for VIM-AS1 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for VIM-AS1 Gene

mRNA expression in normal human tissues for VIM-AS1 Gene
mRNA expression by GTEx for VIM-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for VIM-AS1 Gene

This gene is overexpressed in Artery - Aorta (x4.5) and Artery - Tibial (x4.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for VIM-AS1

SOURCE GeneReport for Unigene cluster for VIM-AS1 Gene:

Hs.740502
genes like me logo Genes that share expression patterns with VIM-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VIM-AS1 Gene

Orthologs for VIM-AS1 Gene

Evolution for VIM-AS1 Gene

ENSEMBL:
Gene Tree for VIM-AS1 (if available)
TreeFam:
Gene Tree for VIM-AS1 (if available)

No data available for Orthologs for VIM-AS1 Gene

Paralogs for VIM-AS1 Gene

No data available for Paralogs for VIM-AS1 Gene

Variants for VIM-AS1 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for VIM-AS1 Gene

SNP ID Clinical significance and condition Chr 10 pos Variation AA Info Type
703473 Benign: Cataract 30 17,229,521(-) G/T NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
772763 Likely Benign: Cataract 30 17,229,964(-) A/C MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
779851 Benign: Cataract 30 17,229,704(-) C/T NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
806442 Uncertain Significance: not provided 17,229,445(-) C/T MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
rs121917775 Pathogenic: Cataract 30; not provided 17,229,873(-) G/A MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for VIM-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for VIM-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2733617 CNV deletion 23290073
nsv1039697 CNV loss 25217958
nsv508571 CNV deletion 20534489
nsv831801 CNV gain 17160897

Additional Variant Information for VIM-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VIM-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for VIM-AS1 Gene

Disorders for VIM-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for VIM-AS1 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
colorectal cancer
  • crc
cataract 30
  • ctrct30
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for VIM-AS1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
genes like me logo Genes that share disorders with VIM-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for VIM-AS1 Gene

Publications for VIM-AS1 Gene

  1. Long noncoding RNA VIM-AS1 promotes colorectal cancer progression and metastasis by inducing EMT. (PMID: 29656793) Rezanejad Bardaji H … Yaghoobi MM (European journal of cell biology 2018) 2 3
  2. Identification of long non-coding RNAs biomarkers associated with progression of endometrial carcinoma and patient outcomes. (PMID: 28881755) Sun Y … Mao Y (Oncotarget 2017) 2 3
  3. Long non-coding RNA VIM-AS1 promotes prostate cancer growth and invasion by regulating epithelial-mesenchymal transition. (PMID: 31786880) Zhang Y … Deng X (Journal of B.U.ON. : official journal of the Balkan Union of Oncology 2019) 3
  4. Discovery and refinement of loci associated with lipid levels. (PMID: 24097068) Willer CJ … Global Lipids Genetics Consortium (Nature genetics 2013) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

ExternalLinks

View latest publications for VIM-AS1 gene in Mastermind

Products for VIM-AS1 Gene

Sources for VIM-AS1 Gene