VENTXP6 Gene (Pseudogene)

VENT Homeobox Pseudogene 6

GC08P073651
GIFtS:
6
Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This pseudogene is a member of the Vent homeobox gene family. [provided by RefSeq, Jul 2008] See more...

Aliases for VENTXP6 Gene

Aliases for VENTXP6 Gene

  • VENT Homeobox Pseudogene 6 2 3 5
  • VENT Homeobox (Xenopus Laevis) Pseudogene 6 2
  • VENT-Like Homeobox Pseudogene 6 3
  • VENTXP6 5

External Ids for VENTXP6 Gene

Previous GeneCards Identifiers for VENTXP6 Gene

  • GC08U900600
  • GC08P074726
  • GC08P074563
  • GC08P070053

Summaries for VENTXP6 Gene

Entrez Gene Summary for VENTXP6 Gene

  • Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This pseudogene is a member of the Vent homeobox gene family. [provided by RefSeq, Jul 2008]

GeneCards Summary for VENTXP6 Gene

VENTXP6 (VENT Homeobox Pseudogene 6) is a Pseudogene.

Additional gene information for VENTXP6 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for VENTXP6 Gene

Genomics for VENTXP6 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for VENTXP6 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH08J073630 Enhancer 0.9 Ensembl ENCODE 0.4 -19.0 -18988 3.7 CTCF PKNOX1 SOX6 EP300 HMBOX1 CTBP1 TCF7 NCOR1 SPI1 MAFK RDH10 RPL7 VENTXP6 piR-50437-639 STAU2
GH08J073629 Enhancer 0.9 Ensembl ENCODE 0.4 -22.4 -22380 1.2 PRDM10 ZNF629 ZNF501 JUND ZXDB CEBPB OSR2 ATF2 EP300 WT1 piR-50437-639 VENTXP6 STAU2 RPL7
GH08J073611 Enhancer 0.8 Ensembl ENCODE 0.3 -38.2 -38200 2 SP1 JUND NFE2 ZNF316 MAFF MAFK MAFG CEBPG HNF4A CEBPB RDH10 piR-50437-639 VENTXP6 STAU2 RPL7
GH08J073627 Enhancer 0.2 Ensembl 0.4 -23.3 -23280 0.2 piR-50437-639 VENTXP6 STAU2 RPL7
GH08J073624 Enhancer 0.2 Ensembl 0.3 -25.8 -25781 1.2 RDH10 piR-50437-639 VENTXP6 STAU2 RPL7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around VENTXP6 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for VENTXP6 Gene

Genomic Locations for VENTXP6 Gene
chr8:73,650,981-73,652,140
(GRCh38/hg38)
Size:
1,160 bases
Orientation:
Plus strand
chr8:74,563,245-74,564,176
(GRCh37/hg19)
Size:
932 bases
Orientation:
Plus strand

Genomic View for VENTXP6 Gene

Genes around VENTXP6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VENTXP6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VENTXP6 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for VENTXP6 Gene

Proteins for VENTXP6 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for VENTXP6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VENTXP6 Gene

Domains & Families for VENTXP6 Gene

Gene Families for VENTXP6 Gene

HGNC:
genes like me logo Genes that share domains with VENTXP6: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for VENTXP6 Gene

Function for VENTXP6 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VENTXP6 Gene

Localization for VENTXP6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for VENTXP6 Gene

Pathways & Interactions for VENTXP6 Gene

PathCards logo

SuperPathways for VENTXP6 Gene

No Data Available

Gene Ontology (GO) - Biological Process for VENTXP6 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for VENTXP6 Gene

Drugs & Compounds for VENTXP6 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for VENTXP6 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for VENTXP6 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for VENTXP6 Gene

No ASD Table

Relevant External Links for VENTXP6 Gene

GeneLoc Exon Structure for
VENTXP6

Expression for VENTXP6 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for VENTXP6 Gene

mRNA expression in normal human tissues for VENTXP6 Gene
mRNA expression by GTEx for VENTXP6 Gene
genes like me logo Genes that share expression patterns with VENTXP6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VENTXP6 Gene

Orthologs for VENTXP6 Gene

Evolution for VENTXP6 Gene

ENSEMBL:
Gene Tree for VENTXP6 (if available)
TreeFam:
Gene Tree for VENTXP6 (if available)

No data available for Orthologs for VENTXP6 Gene

Paralogs for VENTXP6 Gene

No data available for Paralogs for VENTXP6 Gene

Variants for VENTXP6 Gene

Additional Variant Information for VENTXP6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VENTXP6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for VENTXP6 Gene

Disorders for VENTXP6 Gene

No disorders were found for VENTXP6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for VENTXP6 Gene

Publications for VENTXP6 Gene

No publications were found for VENTXP6 Gene.

ExternalLinks

View latest publications for VENTXP6 gene in Mastermind

Products for VENTXP6 Gene

Sources for VENTXP6 Gene