Aliases for VCAN Gene
Aliases for VCAN Gene
External Ids for VCAN Gene
- HGNC: 2464
- Entrez Gene: 1462
- Ensembl: ENSG00000038427
- OMIM: 118661
- UniProtKB: P13611
Previous HGNC Symbols for VCAN Gene
- CSPG2
Previous GeneCards Identifiers for VCAN Gene
- GC05P082804
- GC05P077975
Summaries for VCAN Gene
-
This gene is a member of the aggrecan/versican proteoglycan family. The protein encoded is a large chondroitin sulfate proteoglycan and is a major component of the extracellular matrix. This protein is involved in cell adhesion, proliferation, proliferation, migration and angiogenesis and plays a central role in tissue morphogenesis and maintenance. Mutations in this gene are the cause of Wagner syndrome type 1. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2009]
GeneCards Summary for VCAN Gene
VCAN (Versican) is a Protein Coding gene. Diseases associated with VCAN include Wagner Vitreoretinopathy and Wagner Syndrome. Among its related pathways are Chondroitin sulfate/dermatan sulfate metabolism and Diseases of glycosylation. Gene Ontology (GO) annotations related to this gene include calcium ion binding and extracellular matrix structural constituent. An important paralog of this gene is ACAN.
UniProtKB/Swiss-Prot for VCAN Gene
-
May play a role in intercellular signaling and in connecting cells with the extracellular matrix. May take part in the regulation of cell motility, growth and differentiation. Binds hyaluronic acid.
Additional gene information for VCAN Gene
- Monarch Initiative
- Search for VCAN at DataMed
- Search for VCAN at HumanCyc
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VCAN Gene
Genomics for VCAN Gene
GeneHancer (GH) Regulatory Elements for VCAN Gene
Promoters and enhancers for VCAN Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH05J083470 | Promoter/Enhancer | 2.5 | EPDnew FANTOM5 Ensembl ENCODE dbSUPER | 609.8 | +2.1 | 2135 | 6.4 | SP1 ELF3 CTCF ZNF148 CEBPG ZSCAN21 NCOA3 YY1 SP7 POLR2A | VCAN TMEM167A VCAN-AS1 | |
| GH05J083306 | Enhancer | 1.2 | FANTOM5 Ensembl ENCODE | 13.1 | -165.3 | -165317 | 5.8 | RELA SP1 CREM MLLT1 ZBED1 IKZF1 POLR2A BACH1 IKZF2 SMAD5 | VCAN ENSG00000249664 TMEM167A XRCC4 GC05P083318 GC05M083273 | |
| GH05J083368 | Enhancer | 1 | FANTOM5 ENCODE dbSUPER | 15.7 | -103.0 | -102979 | 1.2 | PKNOX1 RUNX3 JUNB BATF CEBPB ATF2 ZNF217 | VCAN TMEM167A XRCC4 LOC105379053 GC05P083318 | |
| GH05J083375 | Enhancer | 1.1 | FANTOM5 Ensembl ENCODE dbSUPER | 11.4 | -94.5 | -94517 | 7 | CEBPB FOS EP300 | VCAN TMEM167A XRCC4 LOC105379053 GC05P083318 | |
| GH05J083430 | Enhancer | 1 | Ensembl ENCODE | 12.3 | -40.9 | -40917 | 1.4 | ZNF652 ELF3 CTCF RAD21 PKNOX1 GATAD2A REST TRIM22 GABPA SOX13 | VCAN FTH1P9 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around VCAN on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the VCAN gene promoter:
-
- AML1a
- E47
- Egr-3
- GATA-1
- GCNF
- GCNF-1
- GCNF-2
- HNF-3beta
- IRF-7A
- MyoD
Genomic Locations for VCAN Gene
Genomic Locations for VCAN Gene
- chr5:83,471,618-83,582,303
- (GRCh38/hg38)
- Size:
- 110,686 bases
- Orientation:
- Plus strand
- chr5:82,767,284-82,878,122
- (GRCh37/hg19)
- Size:
- 110,839 bases
- Orientation:
- Plus strand
Genomic View for VCAN Gene
Genes around VCAN on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 5q14.2-q14.3 by HGNC
- 5q14.2-q14.3 by Entrez Gene
- 5q14.2 by Ensembl
VCAN Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for VCAN Gene
Proteins for VCAN Gene
-
Protein details for VCAN Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- P13611-CSPG2_HUMAN
- Recommended name:
- Versican core protein
- Protein Accession:
- P13611
- P20754
- Q13010
- Q13189
- Q15123
- Q9UCL9
- Q9UNW5
Protein attributes for VCAN Gene
- Size:
- 3396 amino acids
- Molecular mass:
- 372820 Da
- Quaternary structure:
-
- Interacts with FBLN1.
Protein Expression for VCAN Gene
Post-translational modifications for VCAN Gene
- Phosphorylated by FAM20C in the extracellular medium.
- Glycosylation at isoforms=2, 3, 43379, posLast=886886, posLast=22802280, isoforms=3, 51221, posLast=13321332, posLast=19091909, isoforms=2, 52203, isoforms=2, 52179, isoforms=3, 5869, isoforms=2, 52699, isoforms=2, 52516, isoforms=2, 51442, isoforms=3, 51191, posLast=17441744, posLast=22722272, isoforms=2, 52036, isoforms=3, 5687, isoforms=3, 5782, isoforms=2, 52063, isoforms=2, 51898, isoforms=2, 52448, isoforms=2, 51942, isoforms=2, 53025, isoforms=3, 51133, posLast=24162416, isoforms=2, 51917, posLast=27842784, posLast=16631663, posLast=19261926, isoforms=2, 52458, posLast=11101110, isoforms=2, 52531, posLast=26612661, posLast=799799, posLast=20852085, isoforms=2, 3, 4, 5330, posLast=632632, posLast=23852385, isoforms=3, 5751, isoforms=2, 51763, posLast=21942194, posLast=17721772, posLast=25152515, posLast=13981398, isoforms=2, 51734, posLast=17311731, posLast=615615, isoforms=2, 51742, posLast=642642, posLast=14191419, isoforms=2, 51777, isoforms=3, 5809, isoforms=2, 53067, isoforms=2, 52058, isoforms=2, 52530, posLast=14181418, posLast=10921092, posLast=25402540, isoforms=2, 52153, posLast=15691569, isoforms=2, 52496, posLast=20592059, isoforms=3, 51116, isoforms=3, 5518, isoforms=2, 53029, isoforms=2, 52360, isoforms=2, 51719, posLast=25032503, posLast=17431743, posLast=33693369, posLast=24552455, posLast=23922392, isoforms=2, 52473, posLast=981981, isoforms=3, 5716, isoforms=2, 52456, isoforms=2, 52934, isoforms=3, 51103, isoforms=2, 51566, posLast=27012701, posLast=14681468, isoforms=2, 52656, isoforms=3, 5801, isoforms=2, 52152, posLast=17691769, isoforms=2, 52628, posLast=5757, and posLast=24572457
- Modification sites at PhosphoSitePlus
-
Glycosylation from GlyConnect
- CSPG2_HUMAN (1890)
Other Protein References for VCAN Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- NSJ Bioreagents Versican Antibody
- Atlas Antibodies Anti-VCAN Antibody
-
Custom Antibody ServicesOriGene Antibodies for VCAN
- Novus Biologicals Antibodies for VCAN
-
Abcam antibodies for VCAN
- Invitrogen Antibodies for VCAN (AFLGC-VCAN)
- antibodies-online: Search results for 133 available Vcan Antibodies ranked by validation data
- Compare Top Vcan Antibodies
-
Recommended
- 58 WB Antibodies (anti-rat)
- 12 IF (p) Antibodies (anti-rat)
- 4 IHC (p) Antibodies (anti-rat)
- 53 WB Antibodies (anti-human)
- 12 IF (p) Antibodies (anti-human)
- 6 IHC (p) Antibodies (anti-human)
- 1 IHC Antibody (anti-human)
- 81 WB Antibodies (anti-mouse)
- 12 IF (p) Antibodies (anti-mouse)
- 4 IHC (p) Antibodies (anti-mouse)
- 1 IF Antibody (anti-mouse)
-
Boster Bio Antibodies for VCAN
-
Santa Cruz Biotechnology (SCBT) Antibodies for VCAN
Protein Products
- Atlas Antibodies PrEST Antigen VCAN
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for VCAN
- Origene Custom Protein Services for VCAN
-
Abcam proteins for VCAN
No data available for DME Specific Peptides for VCAN Gene
Domains & Families for VCAN Gene
Gene Families for VCAN Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Disease related genes
- Plasma proteins
- Predicted intracellular proteins
- Predicted secreted proteins
Protein Domains for VCAN Gene
- Blocks:
- InterPro:
- ProtoNet:
Suggested Antigen Peptide Sequences for VCAN Gene
- GenScript: Design optimal peptide antigens:
-
- PG-M (CSPG2_HUMAN)
- VCAN protein (Q86W61_HUMAN)
Graphical View of Domain Structure for InterPro Entry
P13611- Family:
-
- Belongs to the aggrecan/versican proteoglycan family.
Function for VCAN Gene
Molecular function for VCAN Gene
- UniProtKB/Swiss-Prot Function:
- May play a role in intercellular signaling and in connecting cells with the extracellular matrix. May take part in the regulation of cell motility, growth and differentiation. Binds hyaluronic acid.
Phenotypes From GWAS Catalog for VCAN Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005509 | calcium ion binding | IEA | -- |
| GO:0005515 | protein binding | IPI | 23601700 |
| GO:0005539 | glycosaminoglycan binding | TAS | 7528742 |
| GO:0005540 | hyaluronic acid binding | IEA,TAS | -- |
| GO:0030021 | extracellular matrix structural constituent conferring compression resistance | RCA | 20551380 |
Phenotypes for VCAN Gene
- MGI mutant phenotypes for VCAN:
- inferred from 4 alleles
- GenomeRNAi human phenotypes for VCAN:
Animal Models for VCAN Gene
- MGI Knock Outs for VCAN:
-
- Vcan Vcan<tm1.1Dzim>
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for VCAN
-
CRISPR Products
-
OriGene CRISPR knockouts for VCAN
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for VCAN
- genomics-online: gRNA clones - Search results for available Vcan gene related products
- Applied Biological Materials (abm): CRISPR Clones for VCAN - Now 50% OFF >
- * VCAN CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * VCAN CRISPR applications: KO, Activation, Repression, and more - Browse All
-
Santa Cruz Biotechnology (SCBT) CRISPR for VCAN
miRNA for VCAN Gene
- miRTarBase miRNAs that target VCAN
-
- hsa-mir-545-3p (MIRT097548)
- hsa-mir-5197-3p (MIRT097550)
- hsa-mir-103a-3p (MIRT314708)
- hsa-mir-107 (MIRT314709)
- hsa-mir-218-5p (MIRT439309)
- hsa-mir-578 (MIRT546096)
- hsa-mir-3185 (MIRT546097)
- hsa-mir-643 (MIRT546098)
- hsa-mir-335-3p (MIRT651758)
- hsa-mir-4436b-5p (MIRT651759)
- hsa-mir-627-3p (MIRT651760)
- hsa-mir-6777-3p (MIRT651761)
- hsa-mir-5003-3p (MIRT651762)
- hsa-mir-23b-3p (MIRT735532)
- hsa-mir-129-5p (MIRT783635)
- hsa-mir-302c-5p (MIRT784456)
- hsa-mir-361-3p (MIRT784958)
- hsa-mir-3680-3p (MIRT785226)
- hsa-mir-450b-5p (MIRT786069)
- hsa-mir-4666b (MIRT786356)
- hsa-mir-5011-3p (MIRT787007)
- hsa-mir-507 (MIRT787050)
- hsa-mir-552-5p (MIRT787632)
- hsa-mir-557 (MIRT787659)
miRNA Products
Inhibitory RNA Products
- Origene sirna, shrna, and RNAi products in human, mouse, rat for VCAN
- Browse OriGene Inhibitory RNA Products For VCAN
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for VCAN
- genomics-online: shRNA clones - Search results for available Vcan gene related products
Clone Products
-
- MG225673
- MG225674
- MG225675
- MG225930
- MR225673
- MR225673L1
- MR225673L1V
- MR225673L2
- MR225673L2V
- MR225673L3
- MR225673L3V
- MR225673L4
- MR225673L4V
- MR225674
- MR225674L1
- MR225674L1V
- MR225674L2
- MR225674L2V
- MR225674L3
- MR225674L3V
- MR225674L4
- MR225674L4V
- MR225675
- MR225675L1
- MR225675L1V
- MR225675L2
- MR225675L2V
- MR225675L3
- MR225675L3V
- MR225675L4
- MR225675L4V
- MR225930
- MR231982
- RC222552
- RC222552L1
- RC222552L1V
- RC226068
- RC226068L1
- RC226068L1V
- RC226068L2
- RC226068L2V
- RC226068L3
- RC226068L3V
- RC226068L4
- RC226068L4V
- RC228691
- RC228691L1
- RC228691L1V
- RC228691L2
- RC228691L2V
- RC228691L3
- RC228691L3V
- RC228691L4
- RC228691L4V
- RC228709
- RG222552
- RG226068
- RG228691
- RG228709
- RR217058
- RR217671
- RR217768
- RR217802
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Sino Biological Human cDNA Clone for VCAN
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for VCAN
- genomics-online: cdna clones - Search results for available Vcan gene related products
- orf clones - Search results for available Vcan gene related products
- Applied Biological Materials (abm): Clones for VCAN - Now 50% OFF >
- * VCAN as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * VCAN tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All
Cell Line Products
-
Horizon Cell Lines for VCAN
No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for VCAN Gene
Localization for VCAN Gene
Subcellular locations from UniProtKB/Swiss-Prot for VCAN Gene
- Secreted, extracellular space, extracellular matrix.
| Compartment | Confidence |
|---|---|
| extracellular | 4 |
| endoplasmic reticulum | 4 |
| lysosome | 4 |
| golgi apparatus | 4 |
| plasma membrane | 2 |
| nucleus | 2 |
| cytoskeleton | 1 |
| mitochondrion | 1 |
| cytosol | 1 |
- Vesicles (3)
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005576 | extracellular region | HDA,TAS | -- |
| GO:0005615 | extracellular space | HDA | 20551380 |
| GO:0005788 | endoplasmic reticulum lumen | TAS | -- |
| GO:0005796 | Golgi lumen | TAS | -- |
| GO:0016020 | membrane | HDA | 16210410 |
Pathways & Interactions for VCAN Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Chondroitin sulfate/dermatan sulfate metabolism | ||
| 2 | Integrin Pathway |
.67
.67
.56
|
.56
|
| 3 | ERK Signaling |
.61
.58
|
.49
|
| 4 | Glycosaminoglycan metabolism | ||
| 5 | Microglia Activation During Neuroinflammation: Overview | ||
Pathways by source for VCAN Gene
3 BioSystems pathways for VCAN Gene
20 Reactome pathways for VCAN Gene
1 KEGG pathway for VCAN Gene
2 GeneGo (Thomson Reuters) pathways for VCAN Gene
2 R&D Systems pathways for VCAN Gene
13 Qiagen pathways for VCAN Gene
Interacting Proteins for VCAN Gene
Selected Interacting proteins:
P13611-CSPG2_HUMAN
ENSP00000265077
for VCAN Gene via
UniProtKB
MINT
STRING
IID
GPS-Prot Interaction Network for VCAN
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0001501 | skeletal system development | IBA | 21873635 |
| GO:0001649 | osteoblast differentiation | HDA | 16210410 |
| GO:0007155 | cell adhesion | TAS,IEA | -- |
| GO:0007275 | multicellular organism development | TAS | 2583089 |
| GO:0007417 | central nervous system development | IBA | 21873635 |
Drugs & Compounds for VCAN Gene
| Name | Status | Disease Links | Group | Role | Mechanism of Action | Clinical Trials |
|---|---|---|---|---|---|---|
| Hyaluronic acid | Approved, Vet_approved | Pharma | Target, binder | 659 |
| Name | Synonyms | Role | CAS Number | PubChem IDs | PubMed IDs |
|---|
Drug Products
- Atlas Antibodies PrEST Antigen VCAN
Transcripts for VCAN Gene
mRNA/cDNA for VCAN Gene
- (4) REFSEQ mRNAs :
- (20) Additional mRNA sequences :
- (485) Selected AceView cDNA sequences:
- (12) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000265077 12345 bps (ENST00000265077.7)
- ENST00000503923 498 bps (ENST00000503923.1)
- ENST00000512590 5923 bps (ENST00000512590.6)
- ENST00000513960 3973 bps (ENST00000513960.5)
- ENST00000513984 1825 bps (ENST00000513984.5)
CRISPR Products
-
OriGene CRISPR knockouts for VCAN
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for VCAN
- genomics-online: gRNA clones - Search results for available Vcan gene related products
- Applied Biological Materials (abm): CRISPR Clones for VCAN - Now 50% OFF >
- * VCAN CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * VCAN CRISPR applications: KO, Activation, Repression, and more - Browse All
-
Santa Cruz Biotechnology (SCBT) CRISPR for VCAN
miRNA Products
Inhibitory RNA Products
- Origene sirna, shrna, and RNAi products in human, mouse, rat for VCAN
- Browse OriGene Inhibitory RNA Products For VCAN
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for VCAN
- genomics-online: shRNA clones - Search results for available Vcan gene related products
Clone Products
-
- MG225673
- MG225674
- MG225675
- MG225930
- MR225673
- MR225673L1
- MR225673L1V
- MR225673L2
- MR225673L2V
- MR225673L3
- MR225673L3V
- MR225673L4
- MR225673L4V
- MR225674
- MR225674L1
- MR225674L1V
- MR225674L2
- MR225674L2V
- MR225674L3
- MR225674L3V
- MR225674L4
- MR225674L4V
- MR225675
- MR225675L1
- MR225675L1V
- MR225675L2
- MR225675L2V
- MR225675L3
- MR225675L3V
- MR225675L4
- MR225675L4V
- MR225930
- MR231982
- RC222552
- RC222552L1
- RC222552L1V
- RC226068
- RC226068L1
- RC226068L1V
- RC226068L2
- RC226068L2V
- RC226068L3
- RC226068L3V
- RC226068L4
- RC226068L4V
- RC228691
- RC228691L1
- RC228691L1V
- RC228691L2
- RC228691L2V
- RC228691L3
- RC228691L3V
- RC228691L4
- RC228691L4V
- RC228709
- RG222552
- RG226068
- RG228691
- RG228709
- RR217058
- RR217671
- RR217768
- RR217802
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Sino Biological Human cDNA Clone for VCAN
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for VCAN
- genomics-online: cdna clones - Search results for available Vcan gene related products
- orf clones - Search results for available Vcan gene related products
- Applied Biological Materials (abm): Clones for VCAN - Now 50% OFF >
- * VCAN as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * VCAN tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | ^ | 7a | · | 7b | ^ | 8 | ^ | 9a | · | 9b | · | 9c | ^ | 10 | ^ | 11a | · | 11b | ^ | 12 | ^ | 13a | · | 13b | ^ | 14 | ^ | 15 | ^ | 16a | · | 16b | ^ | 17 | ^ |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||
| SP2: | - | - | - | - | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||
| SP3: | - | - | ||||||||||||||||||||||||||||||||||||||||||||||||||
| SP4: | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||||||
| SP5: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| SP6: | - | |||||||||||||||||||||||||||||||||||||||||||||||||||
| SP7: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| SP8: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| SP9: |
| ExUns: | 18a | · | 18b | ^ | 19a | · | 19b | · | 19c | · | 19d |
|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | ||||||||||
| SP2: | - | ||||||||||
| SP3: | - | ||||||||||
| SP4: | |||||||||||
| SP5: | |||||||||||
| SP6: | |||||||||||
| SP7: | |||||||||||
| SP8: | |||||||||||
| SP9: |
Expression for VCAN Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
- Cartilage (Muscoskeletal System)
-
Heart (Cardiovascular System)
- Atrioventricular Valve Cells Atrioventricular Valves
- Cardiomyocytes Outflow Tract
- Paraxial Mesoderm (Gastrulation Derivatives)
- Neural Crest (Gastrulation Derivatives)
- Lateral Plate Mesoderm (Gastrulation Derivatives)
- Bone (Muscoskeletal System)
mRNA differential expression in normal tissues according to GTEx for VCAN Gene
This gene is overexpressed in Artery - Aorta (x8.3), Artery - Coronary (x7.4), and Whole Blood (x6.5).
This gene is overexpressed in Amniocyte (16.9), Spinal cord (10.1), Frontal cortex (8.4), and Brain (6.4).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for VCAN Gene
NURSA nuclear receptor signaling pathways regulating expression of VCAN Gene:
VCANSOURCE GeneReport for Unigene cluster for VCAN Gene:
Hs.643801mRNA Expression by UniProt/SwissProt for VCAN Gene:
P13611-CSPG2_HUMAN
Tissue specificity:
Cerebral white matter and plasma. Isoform V0 and isoform V1 are expressed in normal brain, gliomas, medulloblastomas, schwannomas, neurofibromas, and meningiomas. Isoform V2 is restricted to normal brain and gliomas. Isoform V3 is found in all these tissues except medulloblastomas.
Evidence on tissue expression from TISSUES for VCAN Gene
- Nervous system(4.9)
- Lung(4.6)
- Muscle(4.6)
- Liver(4.2)
- Heart(3.2)
- Kidney(2.9)
- Blood(2.5)
- Intestine(2.5)
- Spleen(2.5)
- Skin(2.4)
- Lymph node(2)
Phenotype-based relationships between genes and organs from Gene ORGANizer for VCAN Gene
Germ Layers:
- ectoderm
- mesoderm
Systems:
- nervous
- skeletal muscle
Regions:
Head and neck:
- brain
- cranial nerve
- eye
- head
General:
- peripheral nervous system
Primer Products
-
OriGene qPCR primer pairs for VCAN
- genomics-online: primer clones - Search results for available Vcan gene related products
Gene Expression Assay Products
No data available for Protein tissue co-expression partners for VCAN Gene
Orthologs for VCAN Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | VCAN 35 34 |
|
OneToOne | |
| dog (Canis familiaris) |
Mammalia | VCAN 35 34 |
|
OneToOne | |
| cow (Bos Taurus) |
Mammalia | VCAN 35 34 |
|
OneToOne | |
| mouse (Mus musculus) |
Mammalia | Vcan 17 35 34 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Vcan 34 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | VCAN 35 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | VCAN 35 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | VCAN 35 |
|
OneToOne | |
| lizard (Anolis carolinensis) |
Reptilia | VCAN 35 |
|
OneToOne | |
| African clawed frog (Xenopus laevis) |
Amphibia | Xl.24776 34 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | vcanb 35 |
|
OneToOne | |
| -- 34 |
|
||||
| worm (Caenorhabditis elegans) |
Secernentea | clec-149 35 |
|
OneToMany |
- Species where no ortholog for VCAN was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
Evolution for VCAN Gene
- ENSEMBL:
- Gene Tree for VCAN (if available)
- TreeFam:
- Gene Tree for VCAN (if available)
- Aminode:
- Evolutionary constrained regions (ECRs) for VCAN: view image
Paralogs for VCAN Gene
(18) SIMAP similar genes for VCAN Gene using alignment to 4 proteins:
- CSPG2_HUMAN
- D6RGZ6_HUMAN
- E9PF17_HUMAN
- Q86W61_HUMAN
Variants for VCAN Gene
| SNP ID | Clin | Chr 05 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs10233 | benign, Wagner syndrome, Vitreoretinopathy | 83,582,037(+) | T/C | 3_prime_UTR_variant | |
| rs10411 | benign, Wagner syndrome, Vitreoretinopathy | 83,582,112(+) | G/T | 3_prime_UTR_variant | |
| rs1050948 | benign, Wagner syndrome, Vitreoretinopathy | 83,582,035(+) | T/A | 3_prime_UTR_variant | |
| rs111455323 | likely-benign, Wagner syndrome, Vitreoretinopathy | 83,581,250(+) | C/A/T | 3_prime_UTR_variant | |
| rs113014073 | benign, not specified, Wagner syndrome, Vitreoretinopathy | 83,542,078(+) | G/A/C | coding_sequence_variant, intron_variant, synonymous_variant |
Residual Variation Intolerance Score:
70.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
14.03;
96.05% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for VCAN Gene
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for VCAN Gene
Disorders for VCAN Gene
(9) MalaCards diseases for VCAN Gene - From: HGMD, OMIM, ClinVar, GTR, Orphanet, DISEASES, and GeneCards
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| wagner vitreoretinopathy |
|
|
| wagner syndrome |
|
|
| tendinopathy |
|
|
| intracranial aneurysm |
|
|
| vitreous syneresis |
|
|
Search VCAN in MalaCards
View complete list of genes associated with diseases
UniProtKB/Swiss-Prot
CSPG2_HUMAN- Wagner vitreoretinopathy (WGVRP) [MIM:143200]: A rare vitreoretinopathy characterized by an optically empty vitreous cavity with fibrillary condensations and a preretinal avascular membrane. Other optical features include progressive chorioretinal atrophy, perivascular sheating, subcapsular cataract and myopia. {ECO:0000269 PubMed:16043844, ECO:0000269 PubMed:22739342}. Note=The disease is caused by mutations affecting the gene represented in this entry. The pathological mechanism involves a quantitave imbalance of the normally occurring splice variants (PubMed:22739342). {ECO:0000269 PubMed:22739342}.
Additional Disease Information for VCAN
- Genetic Association Database
- (GAD)
- Human Genome Epidemiology Navigator
- (HuGE)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No data available for Genatlas for VCAN Gene
Publications for VCAN Gene
- Mapping of the versican proteoglycan gene (CSPG2) to the long arm of human chromosome 5 (5q12-5q14). (PMID: 1478664) Iozzo RV … McPherson JD (Genomics 1992) 2 3 4 23 58
- Chondroitin sulfate proteoglycan 2 (CSPG2) gene polymorphisms rs173686 and rs251124 are not associated with intracranial aneurysms in Chinese Han nationality. (PMID: 18484070) Sun H … Zhao J (Upsala journal of medical sciences 2007) 3 23 45 58
- Identification of a novel splice site mutation of the CSPG2 gene in a Japanese family with Wagner syndrome. (PMID: 16043844) Miyamoto T … Itakura M (Investigative ophthalmology & visual science 2005) 3 4 23 58
- Versican/PG-M isoforms in vascular smooth muscle cells. (PMID: 10397680) Lemire JM … Wight TN (Arteriosclerosis, thrombosis, and vascular biology 1999) 3 4 23 58
- Differential expression of versican isoforms in brain tumors. (PMID: 8627343) Paulus W … Zimmermann DR (Journal of neuropathology and experimental neurology 1996) 3 4 23 58
ExternalLinks
Products for VCAN Gene
- View all 6 R&D Systems VCAN (Versican) Products
- View all 2 R&D Systems VCAN (Versican) cDNA Clones
- View all 3 R&D Systems VCAN (Versican) Primary Antibodies
- View all R&D Systems VCAN (Versican) Proteins and Enzymes
- Learn more about R&D Systems custom VCAN antibody, protein, and immunoassay development services
- Custom Antibody ServicesOriGene Antibodies for VCAN
- Browse OriGene ELISA Kits
- Custom Assay Services
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- Origene Custom Protein Services for VCAN
- Origene sirna, shrna, and RNAi products in human, mouse, rat for VCAN
- Browse OriGene Inhibitory RNA Products For VCAN
- OriGene qPCR primer pairs for VCAN
- OriGene CRISPR knockouts for VCAN
- MG225673
- MG225674
- MG225675
- MG225930
- MR225673
- MR225673L1
- MR225673L1V
- MR225673L2
- MR225673L2V
- MR225673L3
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- MR225673L4
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- MR225674
- MR225674L1
- MR225674L1V
- MR225674L2
- MR225674L2V
- MR225674L3
- MR225674L3V
- MR225674L4
- MR225674L4V
- MR225675
- MR225675L1
- MR225675L1V
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- MR225675L2V
- MR225675L3
- MR225675L3V
- MR225675L4
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- MR225930
- MR231982
- RC222552
- RC222552L1
- RC222552L1V
- RC226068
- RC226068L1
- RC226068L1V
- RC226068L2
- RC226068L2V
- RC226068L3
- RC226068L3V
- RC226068L4
- RC226068L4V
- RC228691
- RC228691L1
- RC228691L1V
- RC228691L2
- RC228691L2V
- RC228691L3
- RC228691L3V
- RC228691L4
- RC228691L4V
- RC228709
- RG222552
- RG226068
- RG228691
- RG228709
- RR217058
- RR217671
- RR217768
- RR217802
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For VCAN
- Sino Biological Human cDNA Clone for VCAN
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- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Novus Biologicals Antibodies for VCAN
- Novus Biologicals proteins and lysates for VCAN
- Novus Biologicals ELISA Kits for VCAN
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Browse Antibodies
- Browse Peptides and Proteins
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- Abcam antibodies for VCAN
- Abcam proteins for VCAN
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- Browse Primary Antibodies
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- Cyagen custom Knockout/knockin (KOKI) mouse models for VCAN
- antibodies-online: Search results for 133 available Vcan Antibodies ranked by validation data
- Compare Top Vcan Antibodies
- Recommended
- 58 WB Antibodies (anti-rat)
- 12 IF (p) Antibodies (anti-rat)
- 4 IHC (p) Antibodies (anti-rat)
- 53 WB Antibodies (anti-human)
- 12 IF (p) Antibodies (anti-human)
- 6 IHC (p) Antibodies (anti-human)
- 1 IHC Antibody (anti-human)
- 81 WB Antibodies (anti-mouse)
- 12 IF (p) Antibodies (anti-mouse)
- 4 IHC (p) Antibodies (anti-mouse)
- 1 IF Antibody (anti-mouse)
- antibodies-online: Search results for 39 available Vcan Elisa Kits ranked by validation data
- Compare Top Vcan Elisa Kits
- antibodies-online: Search results for 5 available Vcan Proteins ranked by validation data
- Compare Top Vcan Proteins
- Santa Cruz Biotechnology (SCBT) Antibodies for VCAN
- Search Santa Cruz Biotechnology (SCBT) for VCAN siRNA/shRNA
- Santa Cruz Biotechnology (SCBT) CRISPR for VCAN
- Horizon Cell Lines for VCAN
- genomics-online: cdna clones - Search results for available Vcan gene related products
- orf clones - Search results for available Vcan gene related products
- genomics-online: gRNA clones - Search results for available Vcan gene related products
- genomics-online: primer clones - Search results for available Vcan gene related products
- genomics-online: shRNA clones - Search results for available Vcan gene related products
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for VCAN
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for VCAN
- Search GeneCopoeia for miRNA 3'UTR Target clone products for VCAN
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for VCAN
- Boster Bio Antibodies for VCAN
- Browse Boster Bio ELISA Kits
Sources for VCAN Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) UniGene
- (28) AceView
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) HGMD
- (45) GAD
- (46) BGMUT
- (47) HuGE
- (48) Atlas
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) OCA
- (69) Proteopedia
- (70) MOPED
- (71) neXtProt
- (72) Reactome
- (73) GeneGo (Thomson Reuters)
- (74) fRNAdb
- (75) DISEASES
- (76) SIMAP
- (77) GenomeRNAi
- (78) LifeMap
- (79) miRTarBase
- (80) MalaCards
- (81) Invitrogen
- (82) BitterDB
- (83) ESI-BIO
- (84) RefSeq
- (85) BioSystems
- (86) MaxQB
- (87) IUPHAR
- (88) BioGPS
- (89) Illumina
- (90) COMPARTMENTS
- (91) HOMER
- (92) PaxDb
- (93) ApexBio
- (94) Addgene
- (95) antibodies-online
- (96) CYP
- (97) NONCODE
- (98) SwitchGear Genomics
- (99) TreeFam
- (100) PathCards
- (101) GeneReviews
- (102) GeneTex
- (103) Taconic Biosciences
- (104) GTEx
- (105) ProteomicsDB
- (106) SCBT
- (107) DGIdb
- (108) ClinicalTrials
- (109) FDA Approved Drugs
- (110) RVIS
- (111) SIGNOR
- (112) diseasecard
- (113) NIH Rare Diseases
- (114) Orphanet
- (115) UMLS
- (116) GTR
- (117) Disease Ontology
- (118) Genetics Home Reference
- (119) MeSH
- (120) MedlinePlus
- (121) CDC
- (122) NINDS
- (123) NCBI Bookshelf
- (124) ClinVar
- (125) Gene Damage Index
- (126) ViGene Biosciences
- (127) HPO
- (128) UDN
- (129) VISTA
- (130) FANTOM5
- (131) ENCODE
- (132) ProSci
- (133) Horizon
- (134) NURSA
- (135) IID
- (136) Cyagen
- (137) VectorBuilder
- (138) SNPedia
- (139) BRCA Exchange
- (140) St John's Lab
- (141) CIViC
- (142) ProteoGenix
- (143) dbSUPER
- (144) TISSUES
- (145) Gene ORGANizer
- (146) abm
- (147) CrownBio
- (148) Human Protein Atlas
- (149) GWAS Catalog
- (150) Monarch Initiative
- (151) DataMed
- (152) HumanCyc
- (153) genomics-online
- (154) UCNEbase
- (155) EPDnew
- (156) Applied Biosystems
- (157) GlyConnect
- (158) Aminode
- (159) GeneCopoeia
- (160) GPS-Prot
- (161) RNACentral
- (162) LncRNADisease
- (163) LOVD
- (164) miR2Disease
- (165) DiseaseEnhancer
- (166) Boster Bio
- (167) Biorbyt
- (168) Biocompare
- (169) Mastermind