Aliases for VAV3-AS1 Gene

Subcategory (RNA class) for VAV3-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for VAV3-AS1 Gene

  • VAV3 Antisense RNA 1 2 3 5
  • VAV3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • VAV3-AS1 2 170
  • HSALNG0005787 169
  • NONHSAG002300 94

External Ids for VAV3-AS1 Gene

Previous GeneCards Identifiers for VAV3-AS1 Gene

  • GC01P108508

Summaries for VAV3-AS1 Gene

GeneCards Summary for VAV3-AS1 Gene

VAV3-AS1 (VAV3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for VAV3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for VAV3-AS1 Gene

Genomics for VAV3-AS1 Gene

GeneHancer (GH) Regulatory Elements for VAV3-AS1 Gene

Promoters and enhancers for VAV3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J107961 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 -0.2 -186 5.2 ZBTB6 ETV6 MNT BCL6B MAFK PRDM1 IKZF1 GLIS2 PKNOX1 ZBTB8A VAV3 VAV3-AS1 HG984097
GH01J108052 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.1 +87.6 87616 4.5 CTCF NR2F6 CREB1 SP7 MCM2 HNF1A ZNF384 ZNF547 IKZF1 TCF7L2 ENSG00000226822 VAV3 VAV3-AS1 CLCC1 lnc-SLC25A24-2
GH01J107934 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 13 -27.9 -27887 3.7 ZNF24 SP1 GATA3 SREBF1 TCF7L2 ZNF217 JUND ETV6 RELA MAX VAV3 VAV3-AS1 HG984097 MIR7852
GH01J107894 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 12.5 -66.5 -66479 6.5 ETV6 CREM MCM2 CEBPG IKZF1 TCF7L2 PRDM10 IKZF2 POLR2A ZXDB MIR7852 VAV3 VAV3-AS1 HG984097
GH01J108071 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 11.8 +113.2 113246 13.4 SMARCE1 CC2D1A DACH1 TEAD4 ZKSCAN8 CBFA2T2 SMARCA4 PRDM1 CREM CEBPG ENSG00000226822 VAV3 VAV3-AS1 FAM102B SLC25A24 PRPF38B lnc-SLC25A24-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around VAV3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for VAV3-AS1 Gene

Genomic Locations for VAV3-AS1 Gene
chr1:107,964,055-108,006,089
(GRCh38/hg38)
Size:
42,035 bases
Orientation:
Plus strand
chr1:108,507,065-108,537,229
(GRCh37/hg19)
Size:
30,165 bases
Orientation:
Plus strand

Genomic View for VAV3-AS1 Gene

Genes around VAV3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VAV3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VAV3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VAV3-AS1 Gene

Proteins for VAV3-AS1 Gene

Post-translational modifications for VAV3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VAV3-AS1 Gene

Domains & Families for VAV3-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for VAV3-AS1 Gene

Function for VAV3-AS1 Gene

Phenotypes From GWAS Catalog for VAV3-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VAV3-AS1 Gene

Localization for VAV3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for VAV3-AS1 Gene

Pathways & Interactions for VAV3-AS1 Gene

PathCards logo

SuperPathways for VAV3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for VAV3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VAV3-AS1 Gene

Drugs & Compounds for VAV3-AS1 Gene

No Compound Related Data Available

Transcripts for VAV3-AS1 Gene

mRNA/cDNA for VAV3-AS1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) NONCODE transcripts :
(11) RNACentral transcripts :
(7) LncBook transcripts :
(9) LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for VAV3-AS1 Gene

No ASD Table

Relevant External Links for VAV3-AS1 Gene

GeneLoc Exon Structure for
VAV3-AS1
ECgene alternative splicing isoforms for
VAV3-AS1

Expression for VAV3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for VAV3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for VAV3-AS1 Gene

This gene is overexpressed in Spleen (x15.1) and Whole Blood (x10.6).

SOURCE GeneReport for Unigene cluster for VAV3-AS1 Gene:

Hs.568676
genes like me logo Genes that share expression patterns with VAV3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VAV3-AS1 Gene

Orthologs for VAV3-AS1 Gene

Evolution for VAV3-AS1 Gene

ENSEMBL:
Gene Tree for VAV3-AS1 (if available)
TreeFam:
Gene Tree for VAV3-AS1 (if available)

No data available for Orthologs for VAV3-AS1 Gene

Paralogs for VAV3-AS1 Gene

No data available for Paralogs for VAV3-AS1 Gene

Variants for VAV3-AS1 Gene

Sequence variations from dbSNP and Humsavar for VAV3-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000198750 -- 107,988,274(+) A/C intron_variant
rs1000260004 -- 107,968,327(+) G/A intron_variant
rs1000377664 -- 107,966,442(+) G/A/T intron_variant
rs1000385067 -- 107,982,420(+) C/A intron_variant
rs1000511111 -- 107,977,171(+) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for VAV3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv248n100 CNV gain 25217958
dgv469n54 CNV gain 21841781
nsv1011093 CNV gain 25217958
nsv1078618 CNV deletion 25765185
nsv472134 CNV novel sequence insertion 20440878
nsv524680 CNV gain 19592680

Additional Variant Information for VAV3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VAV3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for VAV3-AS1 Gene

Disorders for VAV3-AS1 Gene

Additional Disease Information for VAV3-AS1

No disorders were found for VAV3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VAV3-AS1 Gene

Publications for VAV3-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 56

Products for VAV3-AS1 Gene

Sources for VAV3-AS1 Gene