Aliases for VAV3-AS1 Gene

Data sources for VAV3-AS1 Gene:

Subcategory (RNA class) for VAV3-AS1 Gene

lncRNA

Aliases for VAV3-AS1 Gene

External Ids for VAV3-AS1 Gene

Previous GeneCards Identifiers for VAV3-AS1 Gene

  • GC01P108508

Summaries for VAV3-AS1 Gene

GeneCards Summary for VAV3-AS1 Gene

VAV3-AS1 (VAV3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with VAV3-AS1 include Vitreoretinal Degeneration, Snowflake Type.

Additional gene information for VAV3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for VAV3-AS1 Gene

Genomics for VAV3-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for VAV3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J107961 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 -0.2 -185 5.2 ZNF217 SIN3A CTCF MAFF ZNF341 CTBP1 YY1 ZBTB40 ZNF2 BATF VAV3 VAV3-AS1 HSALNG0005788 HG984097 TRUND-NNN8-1 NTNG1
GH01J108052 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.1 +87.6 87617 4.5 FEZF1 IKZF1 SIX4 CTCF FOXA2 RAD21 SPI1 SOX5 HNF4A TBX3 MN296832 MN296833 LINC02785 VAV3 VAV3-AS1 CLCC1 SLC25A24
GH01J107934 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 13 -27.9 -27886 3.7 BCL11A SP1 FEZF1 ZNF217 ELF1 CEBPB SIN3A MBD2 CUX1 ZNF639 VAV3 VAV3-AS1 HG984097 TRUND-NNN8-1 MIR7852 NTNG1
GH01J107894 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 12.5 -66.5 -66478 6.5 FEZF1 EBF1 ZNF843 PRDM6 SPI1 POLR2A MCM2 IKZF1 L3MBTL2 CEBPB MIR7852 VAV3 PRPF38B VAV3-AS1 SLC25A24 HG984097 TRUND-NNN8-1 NTNG1
GH01J108071 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.8 +113.2 113247 13.4 TBP IKZF1 ETS1 ZNF395 HCFC1 VEZF1 TRIM22 ELF1 ZEB2 TAL1 LINC02785 VAV3 VAV3-AS1 FAM102B SLC25A24 PRPF38B MN296833 HSALNG0005795
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around VAV3-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for VAV3-AS1 Gene

Latest Assembly
chr1:107,964,054-108,006,089
(GRCh38/hg38)
Size:
42,036 bases
Orientation:
Plus strand

Previous Assembly
chr1:108,507,065-108,537,229
(GRCh37/hg19 by Entrez Gene)
Size:
30,165 bases
Orientation:
Plus strand

chr1:108,507,065-108,537,229
(GRCh37/hg19 by Ensembl)
Size:
30,165 bases
Orientation:
Plus strand

Genomic View for VAV3-AS1 Gene

Genes around VAV3-AS1 on UCSC Golden Path with GeneCards custom track
VAV3-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
VAV3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VAV3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VAV3-AS1 Gene

Proteins for VAV3-AS1 Gene

Post-translational modifications for VAV3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VAV3-AS1 Gene

Domains & Families for VAV3-AS1 Gene

Gene Families for VAV3-AS1 Gene

genes like me logo Genes that share domains with VAV3-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for VAV3-AS1 Gene

Function for VAV3-AS1 Gene

Phenotypes From GWAS Catalog for VAV3-AS1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VAV3-AS1 Gene

Localization for VAV3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for VAV3-AS1 Gene

Pathways & Interactions for VAV3-AS1 Gene

PathCards logo

SuperPathways for VAV3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for VAV3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for VAV3-AS1 Gene

Drugs & Compounds for VAV3-AS1 Gene

No Compound Related Data Available

Transcripts for VAV3-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for VAV3-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000013D217_9606 lncRNA 622 4

Ensembl: ENST00000438318 (view in UCSC) ,

LncBook: HSALNT0012049,

LNCipedia: VAV3-AS1:1,

NONCODE: NONHSAT004970.2,

URS0000759E9F_9606 lncRNA 619 1

RefSeq: NR_046653,

URS0000D57D52_9606 lncRNA 826 2

LncBook: HSALNT0012046,

LNCipedia: VAV3-AS1:8,

URS0000D57C55_9606 lncRNA 712 2

LncBook: HSALNT0012045,

LNCipedia: VAV3-AS1:6,

URS00009C4970_9606 lncRNA 619 2

LncBook: HSALNT0012048,

NONCODE: NONHSAT149506.1,

VAV3-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for VAV3-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for VAV3-AS1 Gene

No ASD Table

Relevant External Links for VAV3-AS1 Gene

GeneLoc Exon Structure for
VAV3-AS1

Expression for VAV3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for VAV3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for VAV3-AS1 Gene

This gene is overexpressed in Spleen (x15.1) and Whole Blood (x10.6).

SOURCE GeneReport for Unigene cluster for VAV3-AS1 Gene:

Hs.568676
genes like me logo Genes that share expression patterns with VAV3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VAV3-AS1 Gene

Orthologs for VAV3-AS1 Gene

Evolution for VAV3-AS1 Gene

ENSEMBL:
Gene Tree for VAV3-AS1 (if available)
TreeFam:
Gene Tree for VAV3-AS1 (if available)

No data available for Orthologs for VAV3-AS1 Gene

Paralogs for VAV3-AS1 Gene

No data available for Paralogs for VAV3-AS1 Gene

Variants for VAV3-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for VAV3-AS1 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
rs138170759 Likely Benign: not provided 107,964,797(+) A/G
NM_006113.5(VAV3):c.73T>C (p.Trp25Arg)
MISSENSE
rs142499589 Likely Benign: not provided. Benign: not provided 107,964,861(+) C/GC/T
NM_006113.5(VAV3):c.9G>C (p.Pro3=)
SYNONYMOUS

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for VAV3-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for VAV3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv248n100 CNV gain 25217958
dgv469n54 CNV gain 21841781
nsv1011093 CNV gain 25217958
nsv1078618 CNV deletion 25765185
nsv472134 CNV novel sequence insertion 20440878
nsv524680 CNV gain 19592680

Additional Variant Information for VAV3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VAV3-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for VAV3-AS1 Gene

Disorders for VAV3-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for VAV3-AS1 Gene - From: COP

Disorder Aliases PubMed IDs
vitreoretinal degeneration, snowflake type
  • svd
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for VAV3-AS1

genes like me logo Genes that share disorders with VAV3-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for VAV3-AS1 Gene

Publications for VAV3-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3

Products for VAV3-AS1 Gene

Sources for VAV3-AS1 Gene