Aliases for VASH1-AS1 Gene

Subcategory (RNA class) for VASH1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for VASH1-AS1 Gene

  • VASH1 Antisense RNA 1 2 3 5
  • VASH1-AS1 2 168
  • NONHSAG015524 92
  • HSALNG0102587 167

External Ids for VASH1-AS1 Gene

Summaries for VASH1-AS1 Gene

GeneCards Summary for VASH1-AS1 Gene

VASH1-AS1 (VASH1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for VASH1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for VASH1-AS1 Gene

Genomics for VASH1-AS1 Gene

GeneHancer (GH) Regulatory Elements for VASH1-AS1 Gene

Promoters and enhancers for VASH1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J076786 Enhancer 0.3 dbSUPER 506.8 -0.6 -631 1.9 REST VASH1-AS1 VASH1 LRRC74A ANGEL1 ENSG00000259081 ENSG00000286437
GH14J076785 Enhancer 0.2 dbSUPER 500.7 +0.9 918 0.5 VASH1-AS1 VASH1 ANGEL1 LRRC74A piR-37461
GH14J076810 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 6.5 -25.3 -25342 3.7 FOXK2 ZBTB40 ZNF217 EP300 CTCF SIN3A NRF1 TCF12 MYC POLR2G ANGEL1 ENSG00000259081 VASH1-AS1 LINC01629 LRRC74A piR-58953 piR-35674-147
GH14J076780 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.9 +4.1 4123 5.6 ZNF217 CTCF REST RAD21 CTBP1 TRIM22 NFYB SMC3 HDAC2 ZNF341 ENSG00000259081 piR-37461 piR-59343 VASH1 VASH1-AS1 ENSG00000258610
GH14J076771 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas dbSUPER 7.8 +13.1 13123 3.1 JUND FOS RFX1 HES1 CTBP1 ZNF341 CTCF NR2F2 ESRRA NFRKB VASH1 ENSG00000259081 VASH1-AS1 ENSG00000258610
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around VASH1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for VASH1-AS1 Gene

Genomic Locations for VASH1-AS1 Gene
chr14:76,781,733-76,786,724
(GRCh38/hg38)
Size:
4,992 bases
Orientation:
Minus strand
chr14:77,248,083-77,253,067
(GRCh37/hg19)
Size:
4,985 bases
Orientation:
Minus strand

Genomic View for VASH1-AS1 Gene

Genes around VASH1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VASH1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VASH1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VASH1-AS1 Gene

Proteins for VASH1-AS1 Gene

Post-translational modifications for VASH1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VASH1-AS1 Gene

Domains & Families for VASH1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for VASH1-AS1 Gene

Function for VASH1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VASH1-AS1 Gene

Localization for VASH1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for VASH1-AS1 Gene

Pathways & Interactions for VASH1-AS1 Gene

PathCards logo

SuperPathways for VASH1-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for VASH1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for VASH1-AS1 Gene

Drugs & Compounds for VASH1-AS1 Gene

No Compound Related Data Available

Transcripts for VASH1-AS1 Gene

mRNA/cDNA for VASH1-AS1 Gene

8 RNACentral transcripts :
2 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
2 LncBook transcripts :
7 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for VASH1-AS1 Gene

No ASD Table

Relevant External Links for VASH1-AS1 Gene

GeneLoc Exon Structure for
VASH1-AS1

Expression for VASH1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for VASH1-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VASH1-AS1 Gene

Orthologs for VASH1-AS1 Gene

Evolution for VASH1-AS1 Gene

ENSEMBL:
Gene Tree for VASH1-AS1 (if available)
TreeFam:
Gene Tree for VASH1-AS1 (if available)

No data available for Orthologs for VASH1-AS1 Gene

Paralogs for VASH1-AS1 Gene

No data available for Paralogs for VASH1-AS1 Gene

Variants for VASH1-AS1 Gene

Additional dbSNP identifiers (rs#s) for VASH1-AS1 Gene

Additional Variant Information for VASH1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VASH1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for VASH1-AS1 Gene

Disorders for VASH1-AS1 Gene

Additional Disease Information for VASH1-AS1

No disorders were found for VASH1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VASH1-AS1 Gene

Publications for VASH1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

No data available for Mastermind for VASH1-AS1 Gene

Products for VASH1-AS1 Gene

Sources for VASH1-AS1 Gene