Aliases for VAMP9P Gene

Aliases for VAMP9P Gene

  • Vesicle Associated Membrane Protein 9, Pseudogene 2 3 5
  • TCONS_00008138 2 3
  • VAMP9P 5

External Ids for VAMP9P Gene

Summaries for VAMP9P Gene

GeneCards Summary for VAMP9P Gene

VAMP9P (Vesicle Associated Membrane Protein 9, Pseudogene) is a Pseudogene.

Additional gene information for VAMP9P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for VAMP9P Gene

Genomics for VAMP9P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for VAMP9P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J082283 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE CraniofacialAtlas 600.7 +0.0 34 2 SP1 CREB1 GATAD2A CTCF TEAD4 PRDM10 REST ZNF143 PKNOX1 PATZ1 LOC105377308 VAMP9P lnc-HNRNPD-3 lnc-ENOPH1-1 HNRNPD LOC107986215
GH04J082293 Enhancer 0.8 Ensembl ENCODE 0.4 +8.4 8437 2.4 RELA IKZF2 ARID3A RUNX3 CBFB MEF2D BCL11A NR2F1 JUNB TBL1XR1 ENSG00000273156 VAMP9P piR-48222-253 lnc-ENOPH1-1 lnc-HNRNPD-3 HNRNPD LOC107986215
GH04J082282 Enhancer 0.4 Ensembl 0.7 -2.1 -2063 0.2 SCRT2 NFE2 RAD21 RBPJ HNRNPD LOC105377308 VAMP9P lnc-HNRNPD-3 BIN2P1 LOC107986215
GH04J082274 Enhancer 0.5 Ensembl 0.4 -9.6 -9563 2 CTCF REST RAD21 SMC3 CC2D1A BIN2P1 ENSG00000273156 LOC105377308 VAMP9P lnc-HNRNPD-3 HNRNPD LOC107986215
GH04J082322 Enhancer 0.3 Ensembl 0.3 +38.1 38137 0.2 HLF ENSG00000273156 RF00998-101 piR-32325-121 VAMP9P HNRNPD LOC107986215
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around VAMP9P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for VAMP9P Gene

Genomic Locations for VAMP9P Gene
chr4:82,284,964-82,340,013
(GRCh38/hg38)
Size:
55,050 bases
Orientation:
Plus strand

Genomic View for VAMP9P Gene

Genes around VAMP9P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VAMP9P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VAMP9P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VAMP9P Gene

Proteins for VAMP9P Gene

Post-translational modifications for VAMP9P Gene

No Post-translational modifications

No data available for DME Specific Peptides for VAMP9P Gene

Domains & Families for VAMP9P Gene

Gene Families for VAMP9P Gene

genes like me logo Genes that share domains with VAMP9P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for VAMP9P Gene

Function for VAMP9P Gene

Phenotypes From GWAS Catalog for VAMP9P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VAMP9P Gene

Localization for VAMP9P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for VAMP9P Gene

Pathways & Interactions for VAMP9P Gene

PathCards logo

SuperPathways for VAMP9P Gene

No Data Available

Gene Ontology (GO) - Biological Process for VAMP9P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for VAMP9P Gene

Drugs & Compounds for VAMP9P Gene

No Compound Related Data Available

Transcripts for VAMP9P Gene

mRNA/cDNA for VAMP9P Gene

2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for VAMP9P Gene

No ASD Table

Relevant External Links for VAMP9P Gene

GeneLoc Exon Structure for
VAMP9P

Expression for VAMP9P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VAMP9P Gene

Orthologs for VAMP9P Gene

Evolution for VAMP9P Gene

ENSEMBL:
Gene Tree for VAMP9P (if available)
TreeFam:
Gene Tree for VAMP9P (if available)

No data available for Orthologs for VAMP9P Gene

Paralogs for VAMP9P Gene

No data available for Paralogs for VAMP9P Gene

Variants for VAMP9P Gene

Additional dbSNP identifiers (rs#s) for VAMP9P Gene

Additional Variant Information for VAMP9P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VAMP9P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for VAMP9P Gene

Disorders for VAMP9P Gene

No disorders were found for VAMP9P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for VAMP9P Gene

Publications for VAMP9P Gene

  1. Forty-four novel protein-coding loci discovered using a proteomics informed by transcriptomics (PIT) approach in rat male germ cells. (PMID: 25210130) Chocu S … Pineau C (Biology of reproduction 2014) 2 3
  2. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3

Products for VAMP9P Gene

Sources for VAMP9P Gene