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Aliases for UXT-AS1 Gene

Subcategory (RNA class) for UXT-AS1 Gene

antisense

Quality Score for this RNA gene is

13

Aliases for UXT-AS1 Gene

  • UXT Antisense RNA 1 2 3 5

External Ids for UXT-AS1 Gene

ORGUL Members for UXT-AS1 Gene

Previous GeneCards Identifiers for UXT-AS1 Gene

  • GC0XP047520

Summaries for UXT-AS1 Gene

GeneCards Summary for UXT-AS1 Gene

UXT-AS1 (UXT Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

Additional gene information for UXT-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UXT-AS1 Gene

Genomics for UXT-AS1 Gene

GeneHancer (GH) Regulatory Elements for UXT-AS1 Gene

Promoters and enhancers for UXT-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ047657 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 608.9 +0.0 9 3.1 SP1 CC2D1A ELF3 ZFX MNT NKRF MLLT1 ZNF121 POLR2A GTF2F1 UXT UXT-AS1 INE1 ENSG00000204620 ZNF81 FTSJ1 UBA1 RBM3 ZNF182 RBM10
GH0XJ047216 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.2 -440.2 -440229 5.2 HDGF SP1 ZFX SIX5 NKRF POLR2A MLLT1 GTF2F1 ZNF687 ZSCAN21 CDK16 LOC105373194 ENSG00000224072 ZNF81 ZNF182 INE1 LINC01560 ZNF674-AS1 UBA1 RBM10
GH0XJ048464 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.3 +809.7 809657 7.1 CBFA2T2 NKRF MLLT1 GTF2F1 SMARCA4 MTA1 GMEB1 ARID2 DPF2 IKZF1 SLC38A5 FTSJ1 ZNF182 ENSG00000270012 ZNF81 ENSG00000204620 CCDC22 RN7SL262P PQBP1 ZNF630
GH0XJ048538 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.3 +881.1 881076 3.3 MNT ZNF148 MLLT1 GTF2F1 YY1 SP7 ELF1 SP1 KLF14 CREM TBC1D25 ENSG00000204620 RBM3 LOC101927635 PORCN FTSJ1 RN7SL262P ZNF630 ENSG00000228343 ZNF182
GH0XJ047647 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 6.7 -8.4 -8398 5.3 SP1 ZFX CBFA2T2 NKRF ZSCAN21 ZBTB7A YY1 KLF14 CREM EGR1 ELK1 UXT-AS1 UXT CFP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around UXT-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for UXT-AS1 Gene

Genomic Locations for UXT-AS1 Gene
chrX:47,658,833-47,660,377
(GRCh38/hg38)
Size:
1,545 bases
Orientation:
Plus strand
chrX:47,518,232-47,519,776
(GRCh37/hg19)
Size:
1,545 bases
Orientation:
Plus strand

Genomic View for UXT-AS1 Gene

Genes around UXT-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UXT-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UXT-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UXT-AS1 Gene

Proteins for UXT-AS1 Gene

Post-translational modifications for UXT-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UXT-AS1 Gene

Domains & Families for UXT-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UXT-AS1 Gene

Function for UXT-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UXT-AS1 Gene

Localization for UXT-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UXT-AS1 Gene

Pathways & Interactions for UXT-AS1 Gene

PathCards logo

SuperPathways for UXT-AS1 Gene

No Data Available

Interacting Proteins for UXT-AS1 Gene

Gene Ontology (GO) - Biological Process for UXT-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UXT-AS1 Gene

Drugs & Compounds for UXT-AS1 Gene

No Compound Related Data Available

Transcripts for UXT-AS1 Gene

mRNA/cDNA for UXT-AS1 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for UXT-AS1 Gene

No ASD Table

Relevant External Links for UXT-AS1 Gene

GeneLoc Exon Structure for
UXT-AS1
ECgene alternative splicing isoforms for
UXT-AS1

Expression for UXT-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UXT-AS1 Gene

genes like me logo Genes that share expression patterns with UXT-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UXT-AS1 Gene

Orthologs for UXT-AS1 Gene

Evolution for UXT-AS1 Gene

ENSEMBL:
Gene Tree for UXT-AS1 (if available)
TreeFam:
Gene Tree for UXT-AS1 (if available)

No data available for Orthologs for UXT-AS1 Gene

Paralogs for UXT-AS1 Gene

No data available for Paralogs for UXT-AS1 Gene

Variants for UXT-AS1 Gene

Sequence variations from dbSNP and Humsavar for UXT-AS1 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000508259 -- 47,657,019(+) A/G upstream_transcript_variant
rs1001545882 -- 47,658,915(+) G/A non_coding_transcript_variant
rs1001914470 -- 47,659,204(+) A/G intron_variant
rs1002955508 -- 47,660,528(+) A/G downstream_transcript_variant
rs1004106888 -- 47,657,363(+) C/A upstream_transcript_variant

Additional Variant Information for UXT-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UXT-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for UXT-AS1 Gene

Disorders for UXT-AS1 Gene

Additional Disease Information for UXT-AS1

No disorders were found for UXT-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UXT-AS1 Gene

Publications for UXT-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for UXT-AS1 Gene

Sources for UXT-AS1 Gene

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