Aliases for USP30-AS1 Gene

Subcategory (RNA class) for USP30-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for USP30-AS1 Gene

  • USP30 Antisense RNA 1 2 3 5
  • USP30-AS1 2 5 165
  • USP30 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG012230.2 91
  • HSALNG0093872 164

External Ids for USP30-AS1 Gene

Previous GeneCards Identifiers for USP30-AS1 Gene

  • GC12M109490

Summaries for USP30-AS1 Gene

GeneCards Summary for USP30-AS1 Gene

USP30-AS1 (USP30 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for USP30-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for USP30-AS1 Gene

Genomics for USP30-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for USP30-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J109051 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 +0.7 707 3.4 ZNF221 SP1 GATAD2A TEAD4 ZNF629 TFE3 RFX1 SIX5 LEF1 IKZF1 USP30 USP30-AS1 SART3 RNU4-32P UBE3B WSCD2 CORO1C TCHP KCTD10 MN297188
GH12J109047 Enhancer 0.2 Ensembl 6 +5.3 5322 3.4 MN297188 USP30 USP30-AS1 piR-61945-106 ALKBH2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around USP30-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for USP30-AS1 Gene

Genomic Locations for USP30-AS1 Gene
chr12:109,051,791-109,054,033
(GRCh38/hg38)
Size:
2,243 bases
Orientation:
Minus strand
chr12:109,489,846-109,491,770
(GRCh37/hg19)
Size:
1,925 bases
Orientation:
Minus strand

Genomic View for USP30-AS1 Gene

Genes around USP30-AS1 on UCSC Golden Path with GeneCards custom track
USP30-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
USP30-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for USP30-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for USP30-AS1 Gene

Proteins for USP30-AS1 Gene

Post-translational modifications for USP30-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for USP30-AS1 Gene

Domains & Families for USP30-AS1 Gene

Gene Families for USP30-AS1 Gene

genes like me logo Genes that share domains with USP30-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for USP30-AS1 Gene

Function for USP30-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for USP30-AS1 Gene

Localization for USP30-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for USP30-AS1 Gene

Pathways & Interactions for USP30-AS1 Gene

PathCards logo

SuperPathways for USP30-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for USP30-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for USP30-AS1 Gene

Drugs & Compounds for USP30-AS1 Gene

No Compound Related Data Available

Transcripts for USP30-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for USP30-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A227_9606 lncRNA 978 4

HGNC: 40909,

RefSeq: NR_038996,

LncBook: HSALNT0194648,

LNCipedia: USP30-AS1:2,

URS000021775D_9606 lncRNA 656 3

Ensembl: ENST00000478808 (view in UCSC) ,

LncBook: HSALNT0194650,

LNCipedia: USP30-AS1:3,

URS00008BC72A_9606 lncRNA 1234 2

LNCipedia: USP30-AS1:1,

NONCODE: NONHSAT030587.2,

URS00009B4F55_9606 lncRNA 676 2

LncBook: HSALNT0194649,

NONCODE: NONHSAT163974.1,

USP30-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for USP30-AS1 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for USP30-AS1 Gene

No ASD Table

Relevant External Links for USP30-AS1 Gene

GeneLoc Exon Structure for
USP30-AS1

Expression for USP30-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for USP30-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for USP30-AS1 Gene

This gene is overexpressed in Liver (x5.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for USP30-AS1

SOURCE GeneReport for Unigene cluster for USP30-AS1 Gene:

Hs.660996
genes like me logo Genes that share expression patterns with USP30-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for USP30-AS1 Gene

Orthologs for USP30-AS1 Gene

Evolution for USP30-AS1 Gene

ENSEMBL:
Gene Tree for USP30-AS1 (if available)
TreeFam:
Gene Tree for USP30-AS1 (if available)

No data available for Orthologs for USP30-AS1 Gene

Paralogs for USP30-AS1 Gene

No data available for Paralogs for USP30-AS1 Gene

Variants for USP30-AS1 Gene

Additional dbSNP identifiers (rs#s) for USP30-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for USP30-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2422361 CNV duplication 17116639

Additional Variant Information for USP30-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
USP30-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for USP30-AS1 Gene

Disorders for USP30-AS1 Gene

No disorders were found for USP30-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for USP30-AS1 Gene

Publications for USP30-AS1 Gene

  1. Fine expression profiling of full-length transcripts using a size-unbiased cDNA library prepared with the vector-capping method. (PMID: 18487259) Oshikawa M … Kato S (DNA research : an international journal for rapid publication of reports on genes and genomes 2008) 3

Products for USP30-AS1 Gene

Sources for USP30-AS1 Gene