Aliases for USP3-AS1 Gene

Subcategory (RNA class) for USP3-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for USP3-AS1 Gene

  • USP3 Antisense RNA 1 2 3 5
  • USP3-AS1 2 168
  • NONHSAG017136 92
  • HSALNG0106502 167

External Ids for USP3-AS1 Gene

Previous GeneCards Identifiers for USP3-AS1 Gene

  • GC15M063836

Summaries for USP3-AS1 Gene

GeneCards Summary for USP3-AS1 Gene

USP3-AS1 (USP3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for USP3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for USP3-AS1 Gene

Genomics for USP3-AS1 Gene

GeneHancer (GH) Regulatory Elements for USP3-AS1 Gene

Promoters and enhancers for USP3-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around USP3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for USP3-AS1 Gene

Genomic Locations for USP3-AS1 Gene
chr15:63,544,247-63,601,589
(GRCh38/hg38)
Size:
57,343 bases
Orientation:
Minus strand
chr15:63,836,446-63,893,788
(GRCh37/hg19)
Size:
57,343 bases
Orientation:
Minus strand

Genomic View for USP3-AS1 Gene

Genes around USP3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
USP3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for USP3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for USP3-AS1 Gene

Proteins for USP3-AS1 Gene

Post-translational modifications for USP3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for USP3-AS1 Gene

Domains & Families for USP3-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for USP3-AS1 Gene

Function for USP3-AS1 Gene

Phenotypes From GWAS Catalog for USP3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for USP3-AS1 Gene

Localization for USP3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for USP3-AS1 Gene

Pathways & Interactions for USP3-AS1 Gene

PathCards logo

SuperPathways for USP3-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for USP3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for USP3-AS1 Gene

Drugs & Compounds for USP3-AS1 Gene

No Compound Related Data Available

Transcripts for USP3-AS1 Gene

mRNA/cDNA for USP3-AS1 Gene

26 RNACentral transcripts :
1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
15 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
14 NONCODE transcripts :
10 LncBook transcripts :
17 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for USP3-AS1 Gene

No ASD Table

Relevant External Links for USP3-AS1 Gene

GeneLoc Exon Structure for
USP3-AS1

Expression for USP3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for USP3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for USP3-AS1 Gene

This gene is overexpressed in Whole Blood (x5.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for USP3-AS1

genes like me logo Genes that share expression patterns with USP3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for USP3-AS1 Gene

Orthologs for USP3-AS1 Gene

Evolution for USP3-AS1 Gene

ENSEMBL:
Gene Tree for USP3-AS1 (if available)
TreeFam:
Gene Tree for USP3-AS1 (if available)

No data available for Orthologs for USP3-AS1 Gene

Paralogs for USP3-AS1 Gene

No data available for Paralogs for USP3-AS1 Gene

Variants for USP3-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for USP3-AS1 Gene

SNP ID Clinical significance and condition Chr 15 pos Variation AA Info Type
712841 Benign: not provided 63,588,415(-) C/T NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
779841 Benign: not provided 63,590,745(-) C/T NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for USP3-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for USP3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv827357 CNV gain 20364138
nsv833034 CNV loss 17160897

Additional Variant Information for USP3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
USP3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for USP3-AS1 Gene

Disorders for USP3-AS1 Gene

Additional Disease Information for USP3-AS1

No disorders were found for USP3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for USP3-AS1 Gene

Publications for USP3-AS1 Gene

  1. Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. (PMID: 24324551) Deng X … REDSII Chagas Study Group from the NHLBI Retrovirus Epidemiology Donor Study-II Component International (PloS one 2013) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for USP3-AS1 Gene

Sources for USP3-AS1 Gene