Free for academic non-profit institutions. Other users need a Commercial license

Aliases for USP12-AS2 Gene

Subcategory (RNA class) for USP12-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for USP12-AS2 Gene

  • USP12 Antisense RNA 2 (Head To Head) 2 3 5
  • USP12 Antisense RNA 2 (Non-Protein Coding) 2
  • USP12 Antisense RNA 2 2

External Ids for USP12-AS2 Gene

Previous GeneCards Identifiers for USP12-AS2 Gene

  • GC00U933669
  • GC13P027747

Summaries for USP12-AS2 Gene

GeneCards Summary for USP12-AS2 Gene

USP12-AS2 (USP12 Antisense RNA 2 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for USP12-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for USP12-AS2 Gene

Genomics for USP12-AS2 Gene

GeneHancer (GH) Regulatory Elements for USP12-AS2 Gene

Promoters and enhancers for USP12-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I027167 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 550.8 -1.6 -1556 5.9 ATF1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF48 YY1 TCF12 GLIS2 USP12 USP12-AS2 SNORA27 RPL21 SNORD102 RASL11A LINC00412 USP12-AS1
GH13I027137 Enhancer 0.9 ENCODE 17.5 -34.0 -33973 1.8 PKNOX1 ATF1 TCF12 ZNF766 GATA2 CAVIN1 NCOA1 ZNF592 MEF2D GMEB1 RPL21 SNORA27 USP12 USP12-AS2 PAN3 SNORD102 LINC00412 RASL11A USP12-AS1
GH13I027130 Enhancer 1.4 FANTOM5 Ensembl ENCODE 5.8 -40.6 -40631 3.3 INSM2 BMI1 FEZF1 BATF KLF5 IRF4 RAD21 YY1 ZNF143 ATF7 RASL11A USP12 USP12-AS2 USP12-AS1
GH13I027078 Enhancer 0.7 Ensembl ENCODE 11 -92.4 -92433 2.1 PKNOX1 ARNT POLR2A SCRT2 USP12-AS1 USP12 USP12-AS2 SNORA27 SNORD102 RPL21 LINC00412 RBBP8P2
GH13I027135 Enhancer 0.5 Ensembl 11.5 -37.3 -37258 0.4 OSR2 BCL6B BCL6 ZNF843 YY1 USP12 USP12-AS2 RPL21 SNORA27 SNORD102 LINC00412 USP12-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around USP12-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for USP12-AS2 Gene

Genomic Locations for USP12-AS2 Gene
chr13:27,172,259-27,183,503
(GRCh38/hg38)
Size:
11,245 bases
Orientation:
Plus strand
chr13:27,746,396-27,757,135
(GRCh37/hg19)

Genomic View for USP12-AS2 Gene

Genes around USP12-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
USP12-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for USP12-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for USP12-AS2 Gene

Proteins for USP12-AS2 Gene

Post-translational modifications for USP12-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for USP12-AS2 Gene

Domains & Families for USP12-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for USP12-AS2 Gene

Function for USP12-AS2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for USP12-AS2 Gene

Localization for USP12-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for USP12-AS2 Gene

Pathways & Interactions for USP12-AS2 Gene

SuperPathways for USP12-AS2 Gene

No Data Available

Interacting Proteins for USP12-AS2 Gene

Gene Ontology (GO) - Biological Process for USP12-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for USP12-AS2 Gene

Drugs & Compounds for USP12-AS2 Gene

No Compound Related Data Available

Transcripts for USP12-AS2 Gene

mRNA/cDNA for USP12-AS2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for USP12-AS2 Gene

No ASD Table

Relevant External Links for USP12-AS2 Gene

GeneLoc Exon Structure for
USP12-AS2
ECgene alternative splicing isoforms for
USP12-AS2

Expression for USP12-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for USP12-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for USP12-AS2 Gene

This gene is overexpressed in Testis (x7.1) and Brain - Nucleus accumbens (basal ganglia) (x5.5).
genes like me logo Genes that share expression patterns with USP12-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for USP12-AS2 Gene

Orthologs for USP12-AS2 Gene

Evolution for USP12-AS2 Gene

ENSEMBL:
Gene Tree for USP12-AS2 (if available)
TreeFam:
Gene Tree for USP12-AS2 (if available)

No data available for Orthologs for USP12-AS2 Gene

Paralogs for USP12-AS2 Gene

No data available for Paralogs for USP12-AS2 Gene

Variants for USP12-AS2 Gene

Sequence variations from dbSNP and Humsavar for USP12-AS2 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000402333 -- 27,174,189(+) G/T intron_variant
rs1000421107 -- 27,172,452(+) G/A intron_variant
rs1001304685 -- 27,174,901(+) C/A intron_variant
rs1001364335 -- 27,171,511(+) C/T upstream_transcript_variant
rs1001479766 -- 27,171,747(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for USP12-AS2 Gene

Variant ID Type Subtype PubMed ID
esv2583727 CNV deletion 19546169

Additional Variant Information for USP12-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
USP12-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for USP12-AS2 Gene

Disorders for USP12-AS2 Gene

Additional Disease Information for USP12-AS2

No disorders were found for USP12-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for USP12-AS2 Gene

Publications for USP12-AS2 Gene

No publications were found for USP12-AS2 Gene.

Products for USP12-AS2 Gene

Sources for USP12-AS2 Gene

Content
Loading form....