Aliases for USH2A-AS2 Gene

Subcategory (RNA class) for USH2A-AS2 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for USH2A-AS2 Gene

  • USH2A Antisense RNA 2 2 3
  • Novel Transcript 5
  • NONHSAG004281.2 91
  • HSALNG0010536 164
  • AC093581.1 5

External Ids for USH2A-AS2 Gene

Summaries for USH2A-AS2 Gene

GeneCards Summary for USH2A-AS2 Gene

USH2A-AS2 (USH2A Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with USH2A-AS2 include Retinitis Pigmentosa 39 and Chronic Pain.

Additional gene information for USH2A-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for USH2A-AS2 Gene

Genomics for USH2A-AS2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for USH2A-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J216071 Enhancer 0.3 Ensembl 600.7 -1.2 -1164 0.2 PKNOX1 USH2A-AS2 HSALNG0010535 USH2A KCTD3
GH01J216074 Enhancer 0.2 Ensembl 600.7 +1.8 1836 0.6 USH2A-AS2 lnc-KCTD3-8 USH2A KCTD3
GH01J216044 Enhancer 0.7 Ensembl ENCODE 12.1 -26.9 -26873 1.6 CREB1 ATF7 CEBPB FOS ATF2 BHLHE40 MAFK ZNF366 JUND HSALNG0010535 USH2A-AS2 USH2A KCTD3
GH01J216040 Enhancer 0.5 UCNEbase 11.5 -31.4 -31413 0.3 RFX1 BMI1 USH2A-AS2 HSALNG0010535 piR-41245-025 USH2A KCTD3
GH01J216048 Enhancer 0.3 UCNEbase 12.6 -24.2 -24182 0.5 USH2A-AS2 HSALNG0010535 USH2A KCTD3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around USH2A-AS2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for USH2A-AS2 Gene

Genomic Locations for USH2A-AS2 Gene
chr1:216,072,465-216,086,918
(GRCh38/hg38)
Size:
14,454 bases
Orientation:
Plus strand
chr1:216,245,807-216,260,259
(GRCh37/hg19)
Size:
14,453 bases
Orientation:
Plus strand

Genomic View for USH2A-AS2 Gene

Genes around USH2A-AS2 on UCSC Golden Path with GeneCards custom track
USH2A-AS2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
USH2A-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for USH2A-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for USH2A-AS2 Gene

Proteins for USH2A-AS2 Gene

Post-translational modifications for USH2A-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for USH2A-AS2 Gene

Domains & Families for USH2A-AS2 Gene

Gene Families for USH2A-AS2 Gene

genes like me logo Genes that share domains with USH2A-AS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for USH2A-AS2 Gene

Function for USH2A-AS2 Gene

Phenotypes From GWAS Catalog for USH2A-AS2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for USH2A-AS2 Gene

Localization for USH2A-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for USH2A-AS2 Gene

Pathways & Interactions for USH2A-AS2 Gene

PathCards logo

SuperPathways for USH2A-AS2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for USH2A-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for USH2A-AS2 Gene

Drugs & Compounds for USH2A-AS2 Gene

No Compound Related Data Available

Transcripts for USH2A-AS2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for USH2A-AS2 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000324056_9606 lncRNA 461 3

RefSeq: NR_125992,

Ensembl: ENST00000446411 (view in UCSC) ,

NONCODE: NONHSAT009478.2,

URS00004DA7C0_9606 lncRNA 391 3

Ensembl: ENST00000430890 (view in UCSC) ,

LncBook: HSALNT0021854,

NONCODE: NONHSAT009479.2,

URS000045D138_9606 lncRNA 390 3

Ensembl: ENST00000442606 (view in UCSC) ,

LncBook: HSALNT0021858,

NONCODE: NONHSAT009481.2,

URS00003D367F_9606 lncRNA 343 3

Ensembl: ENST00000445619 (view in UCSC) ,

LncBook: HSALNT0021856,

NONCODE: NONHSAT009480.2,

URS00007E3CAF_9606 lncRNA 332 2

RefSeq: NR_125993,

NONCODE: NONHSAT150516.1,

USH2A-AS2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for USH2A-AS2 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for USH2A-AS2 Gene

No ASD Table

Relevant External Links for USH2A-AS2 Gene

GeneLoc Exon Structure for
USH2A-AS2

Expression for USH2A-AS2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for USH2A-AS2 Gene

Orthologs for USH2A-AS2 Gene

Evolution for USH2A-AS2 Gene

ENSEMBL:
Gene Tree for USH2A-AS2 (if available)
TreeFam:
Gene Tree for USH2A-AS2 (if available)

No data available for Orthologs for USH2A-AS2 Gene

Paralogs for USH2A-AS2 Gene

No data available for Paralogs for USH2A-AS2 Gene

Variants for USH2A-AS2 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for USH2A-AS2 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
636121 Likely Pathogenic: Retinitis pigmentosa 216,084,856(+) A/G MISSENSE_VARIANT
636122 Uncertain Significance: Retinitis pigmentosa 216,084,791(+) C/A MISSENSE_VARIANT
636123 Pathogenic: Retinitis pigmentosa 216,078,188(+) C/A NONSENSE
636124 Likely Pathogenic: Retinitis pigmentosa 216,078,113(+) AAG/A FRAMESHIFT_VARIANT
661126 Pathogenic: not provided 216,073,109(+) G/A NONSENSE

Additional dbSNP identifiers (rs#s) for USH2A-AS2 Gene

Additional Variant Information for USH2A-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
USH2A-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for USH2A-AS2 Gene

Disorders for USH2A-AS2 Gene

MalaCards: The human disease database

(7) MalaCards diseases for USH2A-AS2 Gene - From: GeneCards

Disorder Aliases PubMed IDs
retinitis pigmentosa 39
  • rp39
chronic pain
  • pain - chronic
usher syndrome type 2
  • ush2
rare genetic deafness
  • rare genetic hearing loss
usher syndrome
  • retinitis pigmentosa-deafness syndrome
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with USH2A-AS2: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for USH2A-AS2 Gene

Publications for USH2A-AS2 Gene

No publications were found for USH2A-AS2 Gene.

No data available for Mastermind for USH2A-AS2 Gene

Products for USH2A-AS2 Gene

Sources for USH2A-AS2 Gene