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Aliases for URB1-AS1 Gene

Subcategory (RNA class) for URB1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for URB1-AS1 Gene

  • URB1 Antisense RNA 1 (Head To Head) 2 3 5
  • C21orf119 3 4
  • Chromosome 21 Open Reading Frame 119 2
  • URB1 Antisense Gene Protein 1 4
  • URB1 Antisense RNA 1 4
  • PRED84 3

External Ids for URB1-AS1 Gene

Previous HGNC Symbols for URB1-AS1 Gene

  • C21orf119

Summaries for URB1-AS1 Gene

GeneCards Summary for URB1-AS1 Gene

URB1-AS1 (URB1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for URB1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for URB1-AS1 Gene

Genomics for URB1-AS1 Gene

GeneHancer (GH) Regulatory Elements for URB1-AS1 Gene

Promoters and enhancers for URB1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21I032392 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 585.9 +0.1 107 2.4 PKNOX1 CLOCK SMAD1 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF143 URB1-AS1 URB1 PAXBP1 EVA1C SCAF4 ENSG00000238390
GH21I032327 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 34.2 -63.1 -63107 4.4 ELF3 FOXA2 MLX ARID4B ZSCAN9 CREM MIXL1 PAF1 SP5 ELF1 URB1-AS1 URB1 LOC105372779 SNORA80A GC21M032342 PIR45335
GH21I032363 Enhancer 0.9 ENCODE dbSUPER 44.1 -28.6 -28575 1.5 ELF3 SOX13 TFAP4 FOXA2 SAP130 ARID4B RARA TEAD3 NR2F6 CREM URB1-AS1 URB1 LOC105372779 ENSG00000252045 GC21M032360 GC21M032378 SNORA80A
GH21I032370 Enhancer 1.2 Ensembl ENCODE dbSUPER 32.5 -21.2 -21184 3 ZBTB21 JUN ZKSCAN1 ZNF335 SCRT2 FOS ZNF639 ZNF362 ZNF189 ZNF10 URB1-AS1 EVA1C PAXBP1 URB1 LOC105372779 ENSG00000238390 TCP10L SCAF4 SNORA80A GC21M032360
GH21I032347 Enhancer 0.8 ENCODE dbSUPER 34.8 -44.5 -44526 2.5 SMARCE1 CLOCK DPF2 MNT CEBPG ZIC2 SREBF1 CTBP1 FOS URB1-AS1 URB1 SNORA80A LOC105372779 TCP10L GC21M032342 GC21M032360
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around URB1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for URB1-AS1 Gene

Genomic Locations for URB1-AS1 Gene
chr21:32,393,130-32,393,960
(GRCh38/hg38)
Size:
831 bases
Orientation:
Plus strand
chr21:33,765,439-33,766,269
(GRCh37/hg19)

Genomic View for URB1-AS1 Gene

Genes around URB1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
URB1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for URB1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for URB1-AS1 Gene

Proteins for URB1-AS1 Gene

  • Protein details for URB1-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96HZ7-URAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein URB1-AS1
    Protein Accession:
    Q96HZ7

    Protein attributes for URB1-AS1 Gene

    Size:
    61 amino acids
    Molecular mass:
    6513 Da
    Quaternary structure:
    No Data Available

neXtProt entry for URB1-AS1 Gene

Post-translational modifications for URB1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for URB1-AS1 Gene

Domains & Families for URB1-AS1 Gene

Protein Domains for URB1-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with URB1-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for URB1-AS1 Gene

Function for URB1-AS1 Gene

Gene Ontology (GO) - Molecular Function for URB1-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with URB1-AS1: view

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for URB1-AS1 Gene

Localization for URB1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for URB1-AS1 Gene

Pathways & Interactions for URB1-AS1 Gene

SuperPathways for URB1-AS1 Gene

No Data Available

Interacting Proteins for URB1-AS1 Gene

Gene Ontology (GO) - Biological Process for URB1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for URB1-AS1 Gene

Drugs & Compounds for URB1-AS1 Gene

No Compound Related Data Available

Transcripts for URB1-AS1 Gene

mRNA/cDNA for URB1-AS1 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for URB1-AS1 Gene

No ASD Table

Relevant External Links for URB1-AS1 Gene

GeneLoc Exon Structure for
URB1-AS1
ECgene alternative splicing isoforms for
URB1-AS1

Expression for URB1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for URB1-AS1 Gene

genes like me logo Genes that share expression patterns with URB1-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for URB1-AS1 Gene

Orthologs for URB1-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for URB1-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C21orf119 34
  • 93 (a)
OneToOne
Species where no ortholog for URB1-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for URB1-AS1 Gene

ENSEMBL:
Gene Tree for URB1-AS1 (if available)
TreeFam:
Gene Tree for URB1-AS1 (if available)

Paralogs for URB1-AS1 Gene

No data available for Paralogs for URB1-AS1 Gene

Variants for URB1-AS1 Gene

Sequence variations from dbSNP and Humsavar for URB1-AS1 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000312073 -- 32,391,300(+) A/G upstream_transcript_variant
rs1000616459 -- 32,393,245(+) G/A non_coding_transcript_variant
rs1001624336 -- 32,392,556(+) C/A upstream_transcript_variant
rs1003293914 -- 32,391,988(+) C/T upstream_transcript_variant
rs1003703670 -- 32,393,678(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for URB1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv518458 CNV loss 19592680
nsv834085 CNV gain 17160897

Variation tolerance for URB1-AS1 Gene

Gene Damage Index Score: 4.46; 64.21% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for URB1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
URB1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for URB1-AS1 Gene

Disorders for URB1-AS1 Gene

Additional Disease Information for URB1-AS1

No disorders were found for URB1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for URB1-AS1 Gene

Publications for URB1-AS1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M … Chromosome 21 mapping and sequencing consortium (Nature 2000) 4 58

Products for URB1-AS1 Gene

Sources for URB1-AS1 Gene

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