Free for academic non-profit institutions. Other users need a Commercial license

Aliases for UPP2-IT1 Gene

Subcategory (RNA class) for UPP2-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for UPP2-IT1 Gene

  • UPP2 Intronic Transcript 1 2 3 5
  • UPP2 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for UPP2-IT1 Gene

Previous GeneCards Identifiers for UPP2-IT1 Gene

  • GC00U933690
  • GC02P158985

Summaries for UPP2-IT1 Gene

GeneCards Summary for UPP2-IT1 Gene

UPP2-IT1 (UPP2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for UPP2-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UPP2-IT1 Gene

Genomics for UPP2-IT1 Gene

GeneHancer (GH) Regulatory Elements for UPP2-IT1 Gene

Promoters and enhancers for UPP2-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I158126 Enhancer 1 ENCODE 550.8 +2.0 1968 6.4 FOXA2 MLX ARID4B DMAP1 ZNF48 ETS1 YY1 SLC30A9 ATF7 PAF1 UPP2-IT1 PKP4 GALNT5 GC02P158160 UPP2
GH02I158101 Promoter 1 EPDnew 0.3 -26.1 -26100 0.1 SOX13 FOXA2 TAF1 SAP130 CEBPG ZNF644 RAD21 RARA YY1 CREM UPP2 UPP2-IT1 PTP4A1P1
GH02I158142 Enhancer 0.7 ENCODE 0.4 +15.9 15902 1.9 MEIS2 TFAP4 ATF1 PKNOX1 TEAD4 JUN CEBPG FOSL1 ZNF766 NCOR1 PKP4 GALNT5 GC02P158160 UPP2-IT1
GH02I158113 Enhancer 0.6 FANTOM5 Ensembl 0.4 -13.9 -13939 0.8 CEBPA HNF4A PKP4 UPP2-IT1 PTP4A1P1 UPP2
GH02I158143 Enhancer 0.6 ENCODE 0.4 +14.8 14841 0.1 FOSL1 ZNF766 SMARCA4 SOX6 CEBPB CEBPG CREM SPI1 UPP2-IT1 GC02P158160
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around UPP2-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for UPP2-IT1 Gene

Genomic Locations for UPP2-IT1 Gene
chr2:158,127,957-158,133,988
(GRCh38/hg38)
Size:
6,032 bases
Orientation:
Plus strand
chr2:158,984,469-158,990,500
(GRCh37/hg19)

Genomic View for UPP2-IT1 Gene

Genes around UPP2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UPP2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UPP2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for UPP2-IT1 Gene

Proteins for UPP2-IT1 Gene

Post-translational modifications for UPP2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UPP2-IT1 Gene

Domains & Families for UPP2-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UPP2-IT1 Gene

Function for UPP2-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UPP2-IT1 Gene

Localization for UPP2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UPP2-IT1 Gene

Pathways & Interactions for UPP2-IT1 Gene

SuperPathways for UPP2-IT1 Gene

No Data Available

Interacting Proteins for UPP2-IT1 Gene

Gene Ontology (GO) - Biological Process for UPP2-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UPP2-IT1 Gene

Drugs & Compounds for UPP2-IT1 Gene

No Compound Related Data Available

Transcripts for UPP2-IT1 Gene

mRNA/cDNA for UPP2-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for UPP2-IT1 Gene

No ASD Table

Relevant External Links for UPP2-IT1 Gene

GeneLoc Exon Structure for
UPP2-IT1
ECgene alternative splicing isoforms for
UPP2-IT1

Expression for UPP2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UPP2-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for UPP2-IT1 Gene

This gene is overexpressed in Liver (x9.5), Kidney - Cortex (x5.5), and Brain - Nucleus accumbens (basal ganglia) (x4.3).
genes like me logo Genes that share expression patterns with UPP2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UPP2-IT1 Gene

Orthologs for UPP2-IT1 Gene

Evolution for UPP2-IT1 Gene

ENSEMBL:
Gene Tree for UPP2-IT1 (if available)
TreeFam:
Gene Tree for UPP2-IT1 (if available)

No data available for Orthologs for UPP2-IT1 Gene

Paralogs for UPP2-IT1 Gene

No data available for Paralogs for UPP2-IT1 Gene

Variants for UPP2-IT1 Gene

Additional Variant Information for UPP2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UPP2-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for UPP2-IT1 Gene

Disorders for UPP2-IT1 Gene

No disorders were found for UPP2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for UPP2-IT1 Gene

Publications for UPP2-IT1 Gene

No publications were found for UPP2-IT1 Gene.

Products for UPP2-IT1 Gene

Sources for UPP2-IT1 Gene

Content
Loading form....