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Aliases for UPK3BP1 Gene

Aliases for UPK3BP1 Gene

  • Uroplakin 3B Pseudogene 1 2 3 5

External Ids for UPK3BP1 Gene

Previous GeneCards Identifiers for UPK3BP1 Gene

  • GC00U933905
  • GC07P076634

Summaries for UPK3BP1 Gene

GeneCards Summary for UPK3BP1 Gene

UPK3BP1 (Uroplakin 3B Pseudogene 1) is a Pseudogene.

Additional gene information for UPK3BP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UPK3BP1 Gene

Genomics for UPK3BP1 Gene

GeneHancer (GH) Regulatory Elements for UPK3BP1 Gene

Promoters and enhancers for UPK3BP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I077000 Enhancer 0.4 dbSUPER 575.7 -0.5 -450 6.7 PKNOX1 POLR2A UPK3BP1 SPDYE18 PMS2P9 GC07M076952 GC07M076953 GC07M076954 DTX2P1 GC07M076981 GC07M076982 GC07M076983
GH07I077007 Enhancer 1.1 Ensembl ENCODE dbSUPER 23.1 +3.4 3383 0.7 SMARCE1 ESRRA MAZ NFIA RXRA NFIB SIN3A DPF2 MNT RAD21 UPK3BP1 ZP3 PMS2P11 GC07M076952 GC07M076954 GC07M076953 GC07M076981 GC07M076985 GC07M076987 GC07M076990
GH07I076939 Enhancer 0.5 dbSUPER 25.3 -61.8 -61753 7.2 IKZF1 IKZF2 PRDM1 RELA SPI1 UPK3BP1 PMS2P9 SPDYE18 GC07M076948 GC07M076950 LOC105375358
GH07I077009 Enhancer 0.8 Ensembl ENCODE dbSUPER 13.9 +5.6 5646 1 RFX1 FOS TCF7L2 PMS2P11 UPK3BP1 SPDYE18 PMS2P9 GC07M076952 GC07M076953 GC07M076954 GC07M076981 GC07M076982 GC07M076985
GH07I076976 Enhancer 0.3 dbSUPER 26.3 -26.6 -26589 2.7 ATF4 DTX2P1 LOC105375361 UPK3BP1 PMS2P9 SPDYE18 ENSG00000283398 DTX2P1-UPK3BP1-PMS2P11 GC07M076952 GC07M076953 GC07M076954
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around UPK3BP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for UPK3BP1 Gene

Genomic Locations for UPK3BP1 Gene
chr7:77,004,662-77,005,774
(GRCh38/hg38)
Size:
1,113 bases
Orientation:
Plus strand
chr7:76,633,979-76,635,091
(GRCh37/hg19)

Genomic View for UPK3BP1 Gene

Genes around UPK3BP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UPK3BP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UPK3BP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UPK3BP1 Gene

Proteins for UPK3BP1 Gene

Post-translational modifications for UPK3BP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UPK3BP1 Gene

Domains & Families for UPK3BP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UPK3BP1 Gene

Function for UPK3BP1 Gene

Phenotypes From GWAS Catalog for UPK3BP1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UPK3BP1 Gene

Localization for UPK3BP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UPK3BP1 Gene

Pathways & Interactions for UPK3BP1 Gene

SuperPathways for UPK3BP1 Gene

No Data Available

Interacting Proteins for UPK3BP1 Gene

Gene Ontology (GO) - Biological Process for UPK3BP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UPK3BP1 Gene

Drugs & Compounds for UPK3BP1 Gene

No Compound Related Data Available

Transcripts for UPK3BP1 Gene

mRNA/cDNA for UPK3BP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for UPK3BP1 Gene

No ASD Table

Relevant External Links for UPK3BP1 Gene

GeneLoc Exon Structure for
UPK3BP1
ECgene alternative splicing isoforms for
UPK3BP1

Expression for UPK3BP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UPK3BP1 Gene

mRNA differential expression in normal tissues according to GTEx for UPK3BP1 Gene

This gene is overexpressed in Esophagus - Mucosa (x5.3), Bladder (x4.9), and Adipose - Visceral (Omentum) (x4.7).

NURSA nuclear receptor signaling pathways regulating expression of UPK3BP1 Gene:

UPK3BP1
genes like me logo Genes that share expression patterns with UPK3BP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UPK3BP1 Gene

Orthologs for UPK3BP1 Gene

Evolution for UPK3BP1 Gene

ENSEMBL:
Gene Tree for UPK3BP1 (if available)
TreeFam:
Gene Tree for UPK3BP1 (if available)

No data available for Orthologs for UPK3BP1 Gene

Paralogs for UPK3BP1 Gene

No data available for Paralogs for UPK3BP1 Gene

Variants for UPK3BP1 Gene

Additional Variant Information for UPK3BP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UPK3BP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for UPK3BP1 Gene

Disorders for UPK3BP1 Gene

No disorders were found for UPK3BP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for UPK3BP1 Gene

Publications for UPK3BP1 Gene

No publications were found for UPK3BP1 Gene.

Products for UPK3BP1 Gene

Sources for UPK3BP1 Gene

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