Aliases for UPK3BP1 Gene

Aliases for UPK3BP1 Gene

  • Uroplakin 3B Pseudogene 1 2 3 5

External Ids for UPK3BP1 Gene

Previous GeneCards Identifiers for UPK3BP1 Gene

  • GC00U933905
  • GC07P076634

Summaries for UPK3BP1 Gene

GeneCards Summary for UPK3BP1 Gene

UPK3BP1 (Uroplakin 3B Pseudogene 1) is a Pseudogene.

Additional gene information for UPK3BP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for UPK3BP1 Gene

Genomics for UPK3BP1 Gene

GeneHancer (GH) Regulatory Elements for UPK3BP1 Gene

Promoters and enhancers for UPK3BP1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J077005 Promoter/Enhancer 0.6 EPDnew dbSUPER 750.6 +1.0 1023 0.1 POLR2A UPK3BP1 CCDC146 PMS2P11 DTX2P1-UPK3BP1-PMS2P11 lnc-CCDC146-1
GH07J077004 Enhancer 0.3 Ensembl dbSUPER 750.6 -1.4 -1361 0.2 UPK3BP1 SPDYE18 lnc-CCDC146-5 DTX2P1 lnc-CCDC146-1 DTX2P1-UPK3BP1-PMS2P11
GH07J077003 Enhancer 0.2 dbSUPER 750.6 -0.9 -940 0.6 UPK3BP1 PMS2P9 lnc-CCDC146-5 DTX2P1 lnc-CCDC146-1 DTX2P1-UPK3BP1-PMS2P11
GH07J076046 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 20.3 -956.8 -956761 3.8 SIN3A SP1 ZBTB40 CTCF SREBF1 SIX5 MLX SMARCE1 RBPJ POLR2A STYXL1 MDH2 ENSG00000280388 STAG3L1 DTX2P1 PMS2P9 PMS2P3 DTX2 UPK3BP1 GTF2IRD2B
GH07J076395 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 12.1 -607.7 -607715 2.9 GTF3C2 ZBTB40 SMARCE1 POLR2A CC2D1A L3MBTL2 DACH1 MNT TEAD4 NFIB ZP3 POMZP3 DTX2P1 PMS2P9 DTX2 FAM185BP SPDYE18 SPDYE5 UPK3B PMS2P3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around UPK3BP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for UPK3BP1 Gene

Genomic Locations for UPK3BP1 Gene
1,113 bases
Plus strand
1,113 bases
Plus strand

Genomic View for UPK3BP1 Gene

Genes around UPK3BP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UPK3BP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UPK3BP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UPK3BP1 Gene

Proteins for UPK3BP1 Gene

Post-translational modifications for UPK3BP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UPK3BP1 Gene

Domains & Families for UPK3BP1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for UPK3BP1 Gene

Function for UPK3BP1 Gene

Phenotypes From GWAS Catalog for UPK3BP1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UPK3BP1 Gene

Localization for UPK3BP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UPK3BP1 Gene

Pathways & Interactions for UPK3BP1 Gene

PathCards logo

SuperPathways for UPK3BP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for UPK3BP1 Gene


No data available for Pathways by source and SIGNOR curated interactions for UPK3BP1 Gene

Drugs & Compounds for UPK3BP1 Gene

No Compound Related Data Available

Transcripts for UPK3BP1 Gene

mRNA/cDNA for UPK3BP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for UPK3BP1 Gene

No ASD Table

Relevant External Links for UPK3BP1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for UPK3BP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UPK3BP1 Gene

mRNA differential expression in normal tissues according to GTEx for UPK3BP1 Gene

This gene is overexpressed in Esophagus - Mucosa (x5.3), Bladder (x4.9), and Adipose - Visceral (Omentum) (x4.7).

NURSA nuclear receptor signaling pathways regulating expression of UPK3BP1 Gene:

genes like me logo Genes that share expression patterns with UPK3BP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UPK3BP1 Gene

Orthologs for UPK3BP1 Gene

Evolution for UPK3BP1 Gene

Gene Tree for UPK3BP1 (if available)
Gene Tree for UPK3BP1 (if available)

No data available for Orthologs for UPK3BP1 Gene

Paralogs for UPK3BP1 Gene

No data available for Paralogs for UPK3BP1 Gene

Variants for UPK3BP1 Gene

Additional Variant Information for UPK3BP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for UPK3BP1 Gene

Disorders for UPK3BP1 Gene

No disorders were found for UPK3BP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for UPK3BP1 Gene

Publications for UPK3BP1 Gene

No publications were found for UPK3BP1 Gene.

Products for UPK3BP1 Gene

Sources for UPK3BP1 Gene