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Aliases for UPF3AP2 Gene

Subcategory (RNA class) for UPF3AP2 Gene

lncRNA

Aliases for UPF3AP2 Gene

  • UPF3A Pseudogene 2 2 3 5
  • UPF3 Regulator Of Nonsense Transcripts Homolog A (Yeast) Pseudogene 2 2

External Ids for UPF3AP2 Gene

ORGUL Members for UPF3AP2 Gene

Previous GeneCards Identifiers for UPF3AP2 Gene

  • GC17M020278

Summaries for UPF3AP2 Gene

GeneCards Summary for UPF3AP2 Gene

UPF3AP2 (UPF3A Pseudogene 2) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for UPF3AP2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UPF3AP2 Gene

Genomics for UPF3AP2 Gene

GeneHancer (GH) Regulatory Elements for UPF3AP2 Gene

Promoters and enhancers for UPF3AP2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I020376 Promoter 0.6 Ensembl 550.8 +0.0 39 0.4 ZNF512 UPF3AP2 PIR58054 CCDC144CP
GH17I021039 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 50.3 -665.4 -665430 5.5 ZFP64 FEZF1 DMAP1 YY1 ZNF213 ZNF143 SP3 NFYC ZNF610 ZNF585B USP22 MEIS3P2 UPF3AP2 ENSG00000266050 CCDC144NL-AS1 DHRS7B RPL21P120 C17orf51 USP32P3 PIR42715
GH17I019506 Enhancer 1.3 Ensembl ENCODE 31.8 +869.0 869003 2.6 ARID4B SIN3A ZNF2 IRF4 YY1 SLC30A9 ZNF213 ZNF207 ZNF143 FOS GC17P019661 TRW-CCA2-1 UPF3AP2 ENSG00000264885 ZNF286B TVP23B FAM106A PRPSAP2 ENSG00000273018 USP32P2
GH17I020008 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 11.5 +366.6 366566 3.5 HDGF PKNOX1 ARNT SIN3A ZNF2 ZNF207 ZNF143 KLF13 SP3 ZHX2 ENSG00000261033 SPECC1 AKAP10 MEIS3P2 MAPK7 LGALS9B UPF3AP2 ENSG00000262202 ENSG00000264932 ULK2
GH17I019726 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 14.5 +649.0 649020 3.1 FOXA2 NFIB RAD21 YY1 ZNF335 ZNF23 RCOR1 ATF7 EGR2 ZNF362 UPF3AP2 ENSG00000252349 ALDH3A2 SLC47A1 PRPSAP2 B9D1 SLC47A2 ALDH3A1 MAPK7 ENSG00000262681
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around UPF3AP2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for UPF3AP2 Gene

Genomic Locations for UPF3AP2 Gene
chr17:20,374,816-20,376,840
(GRCh38/hg38)
Size:
2,025 bases
Orientation:
Minus strand
chr17:20,278,129-20,280,153
(GRCh37/hg19)

Genomic View for UPF3AP2 Gene

Genes around UPF3AP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UPF3AP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UPF3AP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UPF3AP2 Gene

Proteins for UPF3AP2 Gene

Post-translational modifications for UPF3AP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UPF3AP2 Gene

Domains & Families for UPF3AP2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UPF3AP2 Gene

Function for UPF3AP2 Gene

Phenotypes From GWAS Catalog for UPF3AP2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UPF3AP2 Gene

Localization for UPF3AP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UPF3AP2 Gene

Pathways & Interactions for UPF3AP2 Gene

SuperPathways for UPF3AP2 Gene

No Data Available

Interacting Proteins for UPF3AP2 Gene

Gene Ontology (GO) - Biological Process for UPF3AP2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for UPF3AP2 Gene

Drugs & Compounds for UPF3AP2 Gene

No Compound Related Data Available

Transcripts for UPF3AP2 Gene

mRNA/cDNA for UPF3AP2 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for UPF3AP2 Gene

No ASD Table

Relevant External Links for UPF3AP2 Gene

GeneLoc Exon Structure for
UPF3AP2
ECgene alternative splicing isoforms for
UPF3AP2

Expression for UPF3AP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UPF3AP2 Gene

NURSA nuclear receptor signaling pathways regulating expression of UPF3AP2 Gene:

UPF3AP2
genes like me logo Genes that share expression patterns with UPF3AP2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UPF3AP2 Gene

Orthologs for UPF3AP2 Gene

Evolution for UPF3AP2 Gene

ENSEMBL:
Gene Tree for UPF3AP2 (if available)
TreeFam:
Gene Tree for UPF3AP2 (if available)

No data available for Orthologs for UPF3AP2 Gene

Paralogs for UPF3AP2 Gene

No data available for Paralogs for UPF3AP2 Gene

Variants for UPF3AP2 Gene

Additional Variant Information for UPF3AP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UPF3AP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for UPF3AP2 Gene

Disorders for UPF3AP2 Gene

No disorders were found for UPF3AP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for UPF3AP2 Gene

Publications for UPF3AP2 Gene

  1. Structure and evolution of the Smith-Magenis syndrome repeat gene clusters, SMS-REPs. (PMID: 11997339) Park SS … Lupski JR (Genome research 2002) 2 3 58

Products for UPF3AP2 Gene

Sources for UPF3AP2 Gene

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