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Aliases for UPF3AP1 Gene

Subcategory (RNA class) for UPF3AP1 Gene


Aliases for UPF3AP1 Gene

  • UPF3A Pseudogene 1 2 3 5
  • UPF3 Regulator Of Nonsense Transcripts Homolog A (Yeast) Pseudogene 1 2

External Ids for UPF3AP1 Gene

ORGUL Members for UPF3AP1 Gene

Previous GeneCards Identifiers for UPF3AP1 Gene

  • GC17M016649

Summaries for UPF3AP1 Gene

GeneCards Summary for UPF3AP1 Gene

UPF3AP1 (UPF3A Pseudogene 1) is a Pseudogene, and is affiliated with the antisense RNA class.

Additional gene information for UPF3AP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UPF3AP1 Gene

Genomics for UPF3AP1 Gene

GeneHancer (GH) Regulatory Elements for UPF3AP1 Gene

Promoters and enhancers for UPF3AP1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I016746 Promoter 0.9 Ensembl 550.8 +0.1 61 0.2 MAZ L3MBTL2 ZNF398 ZIC2 ZNF335 HIC1 GLIS2 GLIS1 ZNF341 ZBTB26 UPF3AP1 GC17P016729 CCDC144A ENSG00000266302
GH17I016406 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 32 +339.1 339051 2.2 HDGF SMAD1 ZFP64 SIN3A FEZF1 YBX1 IRF4 ZNF213 ZNF207 ZNF548 PIGL PPIAP53 ENSG00000266538 NCOR1 TVP23C MPRIP-AS1 ZNF286A LOC644422 UPF3AP1 MPRIP
GH17I016212 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 23.3 +531.2 531235 5.9 MLX DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 ZC3H11A ZFP41 PIGL NCOR1 ZSWIM7 ENSG00000266538 PPIAP53 TVP23C LOC644422 ZNF286A UPF3AP1 MPRIP-AS1
GH17I015998 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.6 +747.0 747014 3.1 PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZSWIM7 TTC19 MEIS3P1 ENSG00000265519 ZNF286A UPF3AP1 GC17M016015
GH17I017203 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 11.6 -458.6 -458646 4.1 HDGF PKNOX1 CLOCK MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 PLD6 FLCN LOC100419436 NT5M UPF3AP1 RAI1 COPS3 PIR44036 ENSG00000264187 MPRIP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around UPF3AP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for UPF3AP1 Gene

Genomic Locations for UPF3AP1 Gene
2,023 bases
Minus strand

Genomic View for UPF3AP1 Gene

Genes around UPF3AP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UPF3AP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UPF3AP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UPF3AP1 Gene

Proteins for UPF3AP1 Gene

Post-translational modifications for UPF3AP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UPF3AP1 Gene

Domains & Families for UPF3AP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for UPF3AP1 Gene

Function for UPF3AP1 Gene

Phenotypes From GWAS Catalog for UPF3AP1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UPF3AP1 Gene

Localization for UPF3AP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UPF3AP1 Gene

Pathways & Interactions for UPF3AP1 Gene

SuperPathways for UPF3AP1 Gene

No Data Available

Interacting Proteins for UPF3AP1 Gene

Gene Ontology (GO) - Biological Process for UPF3AP1 Gene


No data available for Pathways by source and SIGNOR curated interactions for UPF3AP1 Gene

Drugs & Compounds for UPF3AP1 Gene

No Compound Related Data Available

Transcripts for UPF3AP1 Gene

mRNA/cDNA for UPF3AP1 Gene

(9) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for UPF3AP1 Gene

No ASD Table

Relevant External Links for UPF3AP1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for UPF3AP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UPF3AP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of UPF3AP1 Gene:

genes like me logo Genes that share expression patterns with UPF3AP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UPF3AP1 Gene

Orthologs for UPF3AP1 Gene

Evolution for UPF3AP1 Gene

Gene Tree for UPF3AP1 (if available)
Gene Tree for UPF3AP1 (if available)

No data available for Orthologs for UPF3AP1 Gene

Paralogs for UPF3AP1 Gene

No data available for Paralogs for UPF3AP1 Gene

Variants for UPF3AP1 Gene

Additional Variant Information for UPF3AP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for UPF3AP1 Gene

Disorders for UPF3AP1 Gene

No disorders were found for UPF3AP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for UPF3AP1 Gene

Publications for UPF3AP1 Gene

  1. Structure and evolution of the Smith-Magenis syndrome repeat gene clusters, SMS-REPs. (PMID: 11997339) Park SS … Lupski JR (Genome research 2002) 2 3 58

Products for UPF3AP1 Gene

Sources for UPF3AP1 Gene

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