Aliases for UMODL1-AS1 Gene

Subcategory (RNA class) for UMODL1-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for UMODL1-AS1 Gene

  • UMODL1 Antisense RNA 1 2 3 4 5
  • UMODL1-AS1 2 5 165
  • C21orf128 3 4
  • Chromosome 21 Open Reading Frame 128 2
  • Uncharacterized Protein UMODL1-AS1 4
  • UMODL1 Antisense Gene Protein 1 4
  • HSALNG0133282 164
  • FLJ33471 2

External Ids for UMODL1-AS1 Gene

Previous HGNC Symbols for UMODL1-AS1 Gene

  • C21orf128

Summaries for UMODL1-AS1 Gene

GeneCards Summary for UMODL1-AS1 Gene

UMODL1-AS1 (UMODL1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for UMODL1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for UMODL1-AS1 Gene

Genomics for UMODL1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for UMODL1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J042107 Promoter/Enhancer 1 Ensembl ENCODE 660.3 +0.3 297 1.1 CTCF ZBTB33 ZNF143 ZIC2 REST RAD21 TRIM22 GTF2F1 ZNF600 SMARCA5 UMODL1-AS1 RF00017-3714 UMODL1 ABCG1
GH21J042113 Enhancer 0.9 Ensembl ENCODE 50.4 -5.2 -5175 3 CEBPG TFE3 ZIC2 POLR2A ZNF600 ZNF341 CEBPA SOX13 CEBPB SMARCA5 UMODL1-AS1 RF00017-3715 UMODL1 ABCG1
GH21J042096 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 31.7 +10.7 10730 2.5 CREB1 PRDM10 ZNF629 ZNF692 JUND ZNF600 ARNT ZBTB44 SP1 ZNF639 UMODL1-AS1 ZBTB21 ZNF295-AS1 UMODL1 C2CD2 ABCG1 RF00017-3714 HSALNG0133281
GH21J042101 Enhancer 0.7 Ensembl ENCODE 43.9 +5.8 5781 3.3 IKZF2 RELB RUNX3 IKZF1 NR2F1 TBX21 MTA2 BHLHE40 RF00017-3714 UMODL1-AS1 UMODL1 ZBTB21 ZNF295-AS1 C2CD2 HSALNG0133281 ABCG1
GH21J042093 Enhancer 0.9 Ensembl ENCODE dbSUPER 29.8 +14.4 14410 1.8 KDM1A CBX3 RFX1 JUND CEBPB ESR1 RCOR1 FOS TBP MAFK UMODL1-AS1 UMODL1 ZBTB21 ZNF295-AS1 HSALNG0133281 RF00017-3714 ABCG1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around UMODL1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for UMODL1-AS1 Gene

Genomic Locations for UMODL1-AS1 Gene
chr21:42,102,133-42,108,534
(GRCh38/hg38)
Size:
6,402 bases
Orientation:
Minus strand
chr21:43,522,244-43,528,644
(GRCh37/hg19)
Size:
6,401 bases
Orientation:
Minus strand

Genomic View for UMODL1-AS1 Gene

Genes around UMODL1-AS1 on UCSC Golden Path with GeneCards custom track
UMODL1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
UMODL1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UMODL1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UMODL1-AS1 Gene

Proteins for UMODL1-AS1 Gene

  • Protein details for UMODL1-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N2C9-UMAS1_HUMAN
    Recommended name:
    Uncharacterized protein UMODL1-AS1
    Protein Accession:
    Q8N2C9

    Protein attributes for UMODL1-AS1 Gene

    Size:
    162 amino acids
    Molecular mass:
    18019 Da
    Quaternary structure:
    No Data Available

neXtProt entry for UMODL1-AS1 Gene

Post-translational modifications for UMODL1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for UMODL1-AS1 Gene

Domains & Families for UMODL1-AS1 Gene

Gene Families for UMODL1-AS1 Gene

Protein Domains for UMODL1-AS1 Gene

ProtoNet:
genes like me logo Genes that share domains with UMODL1-AS1: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for UMODL1-AS1 Gene

Function for UMODL1-AS1 Gene

Phenotypes From GWAS Catalog for UMODL1-AS1 Gene

genes like me logo Genes that share phenotypes with UMODL1-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for UMODL1-AS1 Gene

Localization for UMODL1-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for UMODL1-AS1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for UMODL1-AS1 Gene

Pathways & Interactions for UMODL1-AS1 Gene

PathCards logo

SuperPathways for UMODL1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for UMODL1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for UMODL1-AS1 Gene

Drugs & Compounds for UMODL1-AS1 Gene

No Compound Related Data Available

Transcripts for UMODL1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for UMODL1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E8DA_9606 lncRNA 2141 4

HGNC: 23821,

RefSeq: NR_027243,

Ensembl: ENST00000329015 (view in UCSC) ,

LNCipedia: UMODL1-AS1:1,

URS0000E99C58_9606 lncRNA 2143 1

LncBook: HSALNT0274011,

UMODL1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for UMODL1-AS1 Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for UMODL1-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for UMODL1-AS1 Gene

No ASD Table

Relevant External Links for UMODL1-AS1 Gene

GeneLoc Exon Structure for
UMODL1-AS1

Expression for UMODL1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for UMODL1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for UMODL1-AS1

genes like me logo Genes that share expression patterns with UMODL1-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for UMODL1-AS1 Gene

Orthologs for UMODL1-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for UMODL1-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia C21orf128 31
  • 93 (a)
OneToOne
Species where no ortholog for UMODL1-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for UMODL1-AS1 Gene

ENSEMBL:
Gene Tree for UMODL1-AS1 (if available)
TreeFam:
Gene Tree for UMODL1-AS1 (if available)

Paralogs for UMODL1-AS1 Gene

No data available for Paralogs for UMODL1-AS1 Gene

Variants for UMODL1-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for UMODL1-AS1 Gene

SNP ID Clinical significance and condition Chr 21 pos Variation AA Info Type
742264 Benign: not provided 42,103,933(-) C/T NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
rs220111 - p.Val98Phe

Additional dbSNP identifiers (rs#s) for UMODL1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for UMODL1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1062246 CNV loss 25217958
nsv587624 CNV loss 21841781

Variation tolerance for UMODL1-AS1 Gene

Gene Damage Index Score: 3.73; 57.67% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for UMODL1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
UMODL1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for UMODL1-AS1 Gene

Disorders for UMODL1-AS1 Gene

No disorders were found for UMODL1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UMODL1-AS1 Gene

Publications for UMODL1-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
  3. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M … Chromosome 21 mapping and sequencing consortium (Nature 2000) 3 4
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for UMODL1-AS1 Gene

Sources for UMODL1-AS1 Gene